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TRIM31 (tripartite motif containing 31)

Identity

Alias_namestripartite motif-containing 31
Alias_symbol (synonym)RNF
HCGI
C6orf13
HCG1
Other alias
HGNC (Hugo) TRIM31
LocusID (NCBI) 11074
Atlas_Id 52447
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 30102897 and ends at 30113106 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM31   16289
Cards
Entrez_Gene (NCBI)TRIM31  11074  tripartite motif containing 31
AliasesC6orf13; HCG1; HCGI; RNF
GeneCards (Weizmann)TRIM31
Ensembl hg19 (Hinxton)ENSG00000204616 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204616 [Gene_View]  ENSG00000204616 [Sequence]  chr6:30102897-30113106 [Contig_View]  TRIM31 [Vega]
ICGC DataPortalENSG00000204616
TCGA cBioPortalTRIM31
AceView (NCBI)TRIM31
Genatlas (Paris)TRIM31
WikiGenes11074
SOURCE (Princeton)TRIM31
Genetics Home Reference (NIH)TRIM31
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM31  -     chr6:30102897-30113106 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM31  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblTRIM31 - 6p22.1 [CytoView hg19]  TRIM31 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBITRIM31 [Mapview hg19]  TRIM31 [Mapview hg38]
OMIM609316   
Gene and transcription
Genbank (Entrez)AB303153 AF230386 AF230387 AK222729 AK290270
RefSeq transcript (Entrez)NM_007028
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)TRIM31
Cluster EST : UnigeneHs.493275 [ NCBI ]
CGAP (NCI)Hs.493275
Alternative Splicing GalleryENSG00000204616
Gene ExpressionTRIM31 [ NCBI-GEO ]   TRIM31 [ EBI - ARRAY_EXPRESS ]   TRIM31 [ SEEK ]   TRIM31 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11074
GTEX Portal (Tissue expression)TRIM31
Human Protein AtlasENSG00000204616-TRIM31 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZY9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZY9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZY9
Splice isoforms : SwissVarQ9BZY9
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ9BZY9
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_B-box    Znf_B-box_chordata    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM31
DMDM Disease mutations11074
Blocks (Seattle)TRIM31
PDB (SRS)2YSJ    2YSL   
PDB (PDBSum)2YSJ    2YSL   
PDB (IMB)2YSJ    2YSL   
PDB (RSDB)2YSJ    2YSL   
Structural Biology KnowledgeBase2YSJ    2YSL   
SCOP (Structural Classification of Proteins)2YSJ    2YSL   
CATH (Classification of proteins structures)2YSJ    2YSL   
SuperfamilyQ9BZY9
Human Protein Atlas [tissue]ENSG00000204616-TRIM31 [tissue]
Peptide AtlasQ9BZY9
HPRD10281
IPIIPI00292397   IPI00292398   IPI00744105   IPI01022309   IPI01021215   IPI01021230   IPI00644895   IPI00892854   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZY9
IntAct (EBI)Q9BZY9
FunCoupENSG00000204616
BioGRIDTRIM31
STRING (EMBL)TRIM31
ZODIACTRIM31
Ontologies - Pathways
QuickGOQ9BZY9
Ontology : AmiGOprotein binding  mitochondrion  cytosol  zinc ion binding  protein ubiquitination  transferase activity  negative regulation of viral transcription  innate immune response  negative regulation of viral entry into host cell  positive regulation of DNA-binding transcription factor activity  interferon-gamma-mediated signaling pathway  regulation of viral release from host cell  
Ontology : EGO-EBIprotein binding  mitochondrion  cytosol  zinc ion binding  protein ubiquitination  transferase activity  negative regulation of viral transcription  innate immune response  negative regulation of viral entry into host cell  positive regulation of DNA-binding transcription factor activity  interferon-gamma-mediated signaling pathway  regulation of viral release from host cell  
NDEx NetworkTRIM31
Atlas of Cancer Signalling NetworkTRIM31
Wikipedia pathwaysTRIM31
Orthology - Evolution
OrthoDB11074
GeneTree (enSembl)ENSG00000204616
Phylogenetic Trees/Animal Genes : TreeFamTRIM31
HOVERGENQ9BZY9
HOGENOMQ9BZY9
Homologs : HomoloGeneTRIM31
Homology/Alignments : Family Browser (UCSC)TRIM31
Gene fusions - Rearrangements
Fusion : QuiverTRIM31
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM31
dbVarTRIM31
ClinVarTRIM31
1000_GenomesTRIM31 
Exome Variant ServerTRIM31
ExAC (Exome Aggregation Consortium)ENSG00000204616
GNOMAD BrowserENSG00000204616
Varsome BrowserTRIM31
Genetic variants : HAPMAP11074
Genomic Variants (DGV)TRIM31 [DGVbeta]
DECIPHERTRIM31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM31 
Mutations
ICGC Data PortalTRIM31 
TCGA Data PortalTRIM31 
Broad Tumor PortalTRIM31
OASIS PortalTRIM31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM31
DgiDB (Drug Gene Interaction Database)TRIM31
DoCM (Curated mutations)TRIM31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM31 (select a term)
intoGenTRIM31
Cancer3DTRIM31(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609316   
Orphanet
DisGeNETTRIM31
MedgenTRIM31
Genetic Testing Registry TRIM31
NextProtQ9BZY9 [Medical]
TSGene11074
GENETestsTRIM31
Target ValidationTRIM31
Huge Navigator TRIM31 [HugePedia]
snp3D : Map Gene to Disease11074
BioCentury BCIQTRIM31
ClinGenTRIM31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11074
Chemical/Pharm GKB GenePA38117
Clinical trialTRIM31
Miscellaneous
canSAR (ICR)TRIM31 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM31
EVEXTRIM31
GoPubMedTRIM31
iHOPTRIM31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:46:48 CET 2018

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