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TRIM34 (tripartite motif containing 34)

Identity

Alias_namesRNF21
tripartite motif-containing 34
Other aliasIFP1
HGNC (Hugo) TRIM34
LocusID (NCBI) 53840
Atlas_Id 75150
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5619944 and ends at 5644395 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRIM6 (11p15.4) / TRIM34 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM34   10063
Cards
Entrez_Gene (NCBI)TRIM34  53840  tripartite motif containing 34
AliasesIFP1; RNF21
GeneCards (Weizmann)TRIM34
Ensembl hg19 (Hinxton)ENSG00000258659 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258659 [Gene_View]  chr11:5619944-5644395 [Contig_View]  TRIM34 [Vega]
ICGC DataPortalENSG00000258659
TCGA cBioPortalTRIM34
AceView (NCBI)TRIM34
Genatlas (Paris)TRIM34
WikiGenes53840
SOURCE (Princeton)TRIM34
Genetics Home Reference (NIH)TRIM34
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM34  -     chr11:5619944-5644395 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM34  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblTRIM34 - 11p15.4 [CytoView hg19]  TRIM34 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBITRIM34 [Mapview hg19]  TRIM34 [Mapview hg38]
OMIM605684   
Gene and transcription
Genbank (Entrez)AB039902 AB039904 AF220143 AF220144 AK027876
RefSeq transcript (Entrez)NM_001003827 NM_021616 NM_130389 NM_130390
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM34
Cluster EST : UnigeneHs.729048 [ NCBI ]
CGAP (NCI)Hs.729048
Alternative Splicing GalleryENSG00000258659
Gene ExpressionTRIM34 [ NCBI-GEO ]   TRIM34 [ EBI - ARRAY_EXPRESS ]   TRIM34 [ SEEK ]   TRIM34 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53840
GTEX Portal (Tissue expression)TRIM34
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYJ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYJ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYJ4
Splice isoforms : SwissVarQ9BYJ4
PhosPhoSitePlusQ9BYJ4
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM34
DMDM Disease mutations53840
Blocks (Seattle)TRIM34
PDB (SRS)2EGP   
PDB (PDBSum)2EGP   
PDB (IMB)2EGP   
PDB (RSDB)2EGP   
Structural Biology KnowledgeBase2EGP   
SCOP (Structural Classification of Proteins)2EGP   
CATH (Classification of proteins structures)2EGP   
SuperfamilyQ9BYJ4
Human Protein AtlasENSG00000258659
Peptide AtlasQ9BYJ4
HPRD16141
IPIIPI00719282   IPI00107816   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYJ4
IntAct (EBI)Q9BYJ4
FunCoupENSG00000258659
BioGRIDTRIM34
STRING (EMBL)TRIM34
ZODIACTRIM34
Ontologies - Pathways
QuickGOQ9BYJ4
Ontology : AmiGOmolecular_function  cytoplasm  cytosol  zinc ion binding  positive regulation of sequence-specific DNA binding transcription factor activity  defense response to virus  interferon-gamma-mediated signaling pathway  protein trimerization  
Ontology : EGO-EBImolecular_function  cytoplasm  cytosol  zinc ion binding  positive regulation of sequence-specific DNA binding transcription factor activity  defense response to virus  interferon-gamma-mediated signaling pathway  protein trimerization  
NDEx NetworkTRIM34
Atlas of Cancer Signalling NetworkTRIM34
Wikipedia pathwaysTRIM34
Orthology - Evolution
OrthoDB53840
GeneTree (enSembl)ENSG00000258659
Phylogenetic Trees/Animal Genes : TreeFamTRIM34
HOVERGENQ9BYJ4
HOGENOMQ9BYJ4
Homologs : HomoloGeneTRIM34
Homology/Alignments : Family Browser (UCSC)TRIM34
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM34
dbVarTRIM34
ClinVarTRIM34
1000_GenomesTRIM34 
Exome Variant ServerTRIM34
ExAC (Exome Aggregation Consortium)TRIM34 (select the gene name)
Genetic variants : HAPMAP53840
Genomic Variants (DGV)TRIM34 [DGVbeta]
DECIPHERTRIM34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM34 
Mutations
ICGC Data PortalTRIM34 
TCGA Data PortalTRIM34 
Broad Tumor PortalTRIM34
OASIS PortalTRIM34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM34
DgiDB (Drug Gene Interaction Database)TRIM34
DoCM (Curated mutations)TRIM34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM34 (select a term)
intoGenTRIM34
Cancer3DTRIM34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605684   
Orphanet
MedgenTRIM34
Genetic Testing Registry TRIM34
NextProtQ9BYJ4 [Medical]
TSGene53840
GENETestsTRIM34
Target ValidationTRIM34
Huge Navigator TRIM34 [HugePedia]
snp3D : Map Gene to Disease53840
BioCentury BCIQTRIM34
ClinGenTRIM34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53840
Chemical/Pharm GKB GenePA35533
Clinical trialTRIM34
Miscellaneous
canSAR (ICR)TRIM34 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM34
EVEXTRIM34
GoPubMedTRIM34
iHOPTRIM34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:31 CEST 2017

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