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TRIM36 (tripartite motif containing 36)

Identity

Alias_namestripartite motif-containing 36
Alias_symbol (synonym)RBCC728
RNF98
HAPRIN
Other alias
HGNC (Hugo) TRIM36
LocusID (NCBI) 55521
Atlas_Id 45556
Location 5q22.3  [Link to chromosome band 5q22]
Location_base_pair Starts at 114506799 and ends at 114516243 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TRIM36 (5q22.3) / HEXB (5q13.3)TRIM36 5q22.3 / HEXB 5q13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM36   16280
Cards
Entrez_Gene (NCBI)TRIM36  55521  tripartite motif containing 36
AliasesHAPRIN; RBCC728; RNF98
GeneCards (Weizmann)TRIM36
Ensembl hg19 (Hinxton)ENSG00000152503 [Gene_View]  chr5:114506799-114516243 [Contig_View]  TRIM36 [Vega]
Ensembl hg38 (Hinxton)ENSG00000152503 [Gene_View]  chr5:114506799-114516243 [Contig_View]  TRIM36 [Vega]
ICGC DataPortalENSG00000152503
TCGA cBioPortalTRIM36
AceView (NCBI)TRIM36
Genatlas (Paris)TRIM36
WikiGenes55521
SOURCE (Princeton)TRIM36
Genetics Home Reference (NIH)TRIM36
Genomic and cartography
GoldenPath hg19 (UCSC)TRIM36  -     chr5:114506799-114516243 -  5q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRIM36  -     5q22.3   [Description]    (hg38-Dec_2013)
EnsemblTRIM36 - 5q22.3 [CytoView hg19]  TRIM36 - 5q22.3 [CytoView hg38]
Mapping of homologs : NCBITRIM36 [Mapview hg19]  TRIM36 [Mapview hg38]
OMIM609317   
Gene and transcription
Genbank (Entrez)AB196558 AI142389 AJ272269 AK058179 AK125426
RefSeq transcript (Entrez)NM_001017397 NM_001017398 NM_001300752 NM_001300759 NM_018700
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)TRIM36
Cluster EST : UnigeneHs.638953 [ NCBI ]
CGAP (NCI)Hs.638953
Alternative Splicing GalleryENSG00000152503
Gene ExpressionTRIM36 [ NCBI-GEO ]   TRIM36 [ EBI - ARRAY_EXPRESS ]   TRIM36 [ SEEK ]   TRIM36 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55521
GTEX Portal (Tissue expression)TRIM36
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ86
Splice isoforms : SwissVarQ9NQ86
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.-6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
PhosPhoSitePlusQ9NQ86
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    COS (PS51262)    FN3 (PS50853)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    COS_domain    FN3_dom    Ig-like_fold    Trim36    Znf_B-box    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)fn3 (PF00041)    zf-B_box (PF00643)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam00041    pfam00643    pfam00097   
Domain families : Smart (EMBL)BBOX (SM00336)  FN3 (SM00060)  RING (SM00184)  
Conserved Domain (NCBI)TRIM36
DMDM Disease mutations55521
Blocks (Seattle)TRIM36
SuperfamilyQ9NQ86
Human Protein AtlasENSG00000152503
Peptide AtlasQ9NQ86
HPRD15554
IPIIPI00022643   IPI00747214   IPI00967267   IPI00555588   IPI00964744   IPI00556668   IPI00964485   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ86
IntAct (EBI)Q9NQ86
FunCoupENSG00000152503
BioGRIDTRIM36
STRING (EMBL)TRIM36
ZODIACTRIM36
Ontologies - Pathways
QuickGOQ9NQ86
Ontology : AmiGOprotein polyubiquitination  acrosomal vesicle  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  cytosol  cytoskeleton  acrosome reaction  zinc ion binding  ligase activity  regulation of cell cycle  extracellular exosome  
Ontology : EGO-EBIprotein polyubiquitination  acrosomal vesicle  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  protein binding  cytosol  cytoskeleton  acrosome reaction  zinc ion binding  ligase activity  regulation of cell cycle  extracellular exosome  
NDEx NetworkTRIM36
Atlas of Cancer Signalling NetworkTRIM36
Wikipedia pathwaysTRIM36
Orthology - Evolution
OrthoDB55521
GeneTree (enSembl)ENSG00000152503
Phylogenetic Trees/Animal Genes : TreeFamTRIM36
HOVERGENQ9NQ86
HOGENOMQ9NQ86
Homologs : HomoloGeneTRIM36
Homology/Alignments : Family Browser (UCSC)TRIM36
Gene fusions - Rearrangements
Fusion : MitelmanTRIM36/HEXB [5q22.3/5q13.3]  
Fusion: TCGATRIM36 5q22.3 HEXB 5q13.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM36
dbVarTRIM36
ClinVarTRIM36
1000_GenomesTRIM36 
Exome Variant ServerTRIM36
ExAC (Exome Aggregation Consortium)TRIM36 (select the gene name)
Genetic variants : HAPMAP55521
Genomic Variants (DGV)TRIM36 [DGVbeta]
DECIPHER (Syndromes)5:114506799-114516243  ENSG00000152503
CONAN: Copy Number AnalysisTRIM36 
Mutations
ICGC Data PortalTRIM36 
TCGA Data PortalTRIM36 
Broad Tumor PortalTRIM36
OASIS PortalTRIM36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM36
DgiDB (Drug Gene Interaction Database)TRIM36
DoCM (Curated mutations)TRIM36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM36 (select a term)
intoGenTRIM36
Cancer3DTRIM36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609317   
Orphanet
MedgenTRIM36
Genetic Testing Registry TRIM36
NextProtQ9NQ86 [Medical]
TSGene55521
GENETestsTRIM36
Huge Navigator TRIM36 [HugePedia]
snp3D : Map Gene to Disease55521
BioCentury BCIQTRIM36
ClinGenTRIM36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55521
Chemical/Pharm GKB GenePA38111
Clinical trialTRIM36
Miscellaneous
canSAR (ICR)TRIM36 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM36
EVEXTRIM36
GoPubMedTRIM36
iHOPTRIM36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:28 CEST 2017

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