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TRIM36 (tripartite motif containing 36)

Identity

Alias (NCBI)ANPH
HAPRIN
RBCC728
RNF98
HGNC (Hugo) TRIM36
HGNC Alias symbRBCC728
RNF98
HAPRIN
HGNC Alias namezinc-binding protein Rbcc728
 tripartite motif protein 36
 RING finger protein 98
HGNC Previous nametripartite motif-containing 36
LocusID (NCBI) 55521
Atlas_Id 45556
Location 5q22.3  [Link to chromosome band 5q22]
Location_base_pair Starts at 115124776 and ends at 115180294 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRIM36 (5q22.3) / HEXB (5q13.3)TRIM36 5q22.3 / HEXB 5q13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM36   16280
Cards
Entrez_Gene (NCBI)TRIM36    tripartite motif containing 36
AliasesANPH; HAPRIN; RBCC728; RNF98
GeneCards (Weizmann)TRIM36
Ensembl hg19 (Hinxton)ENSG00000152503 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152503 [Gene_View]  ENSG00000152503 [Sequence]  chr5:115124776-115180294 [Contig_View]  TRIM36 [Vega]
ICGC DataPortalENSG00000152503
TCGA cBioPortalTRIM36
AceView (NCBI)TRIM36
Genatlas (Paris)TRIM36
SOURCE (Princeton)TRIM36
Genetics Home Reference (NIH)TRIM36
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM36  -     chr5:115124776-115180294 -  5q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM36  -     5q22.3   [Description]    (hg19-Feb_2009)
GoldenPathTRIM36 - 5q22.3 [CytoView hg19]  TRIM36 - 5q22.3 [CytoView hg38]
ImmunoBaseENSG00000152503
Genome Data Viewer NCBITRIM36 [Mapview hg19]  
OMIM206500   609317   
Gene and transcription
Genbank (Entrez)AB196558 AI142389 AJ272269 AK058179 AK125426
RefSeq transcript (Entrez)NM_001017397 NM_001017398 NM_001300752 NM_001300759 NM_018700
Consensus coding sequences : CCDS (NCBI)TRIM36
Gene ExpressionTRIM36 [ NCBI-GEO ]   TRIM36 [ EBI - ARRAY_EXPRESS ]   TRIM36 [ SEEK ]   TRIM36 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM36 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM36 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55521
GTEX Portal (Tissue expression)TRIM36
Human Protein AtlasENSG00000152503-TRIM36 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ86
PhosPhoSitePlusQ9NQ86
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    COS (PS51262)    FN3 (PS50853)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    B30.2/SPRY_sf    Butyrophylin_SPRY    ConA-like_dom_sf    COS_domain    FN3_dom    FN3_sf    Ig-like_fold    Midline-1_COS    SPRY/PRY_TRIM36    Trim36    Znf-RING_LisH    Znf_B-box    Znf_RING    Znf_RING_CS   
Domain families : Pfam (Sanger)COS (PF18568)    fn3 (PF00041)    zf-B_box (PF00643)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam18568    pfam00041    pfam00643    pfam13445   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM36
SuperfamilyQ9NQ86
AlphaFold pdb e-kbQ9NQ86   
Human Protein Atlas [tissue]ENSG00000152503-TRIM36 [tissue]
HPRD15554
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ86
IntAct (EBI)Q9NQ86
BioGRIDTRIM36
STRING (EMBL)TRIM36
ZODIACTRIM36
Ontologies - Pathways
QuickGOQ9NQ86
Ontology : AmiGOprotein polyubiquitination  mitotic cytokinesis  acrosomal vesicle  ubiquitin-protein transferase activity  protein binding  cytoplasm  cytosol  cytoskeleton  spindle organization  acrosome reaction  zinc ion binding  alpha-tubulin binding  regulation of cell cycle  regulation of microtubule cytoskeleton organization  
Ontology : EGO-EBIprotein polyubiquitination  mitotic cytokinesis  acrosomal vesicle  ubiquitin-protein transferase activity  protein binding  cytoplasm  cytosol  cytoskeleton  spindle organization  acrosome reaction  zinc ion binding  alpha-tubulin binding  regulation of cell cycle  regulation of microtubule cytoskeleton organization  
NDEx NetworkTRIM36
Atlas of Cancer Signalling NetworkTRIM36
Wikipedia pathwaysTRIM36
Orthology - Evolution
OrthoDB55521
GeneTree (enSembl)ENSG00000152503
Phylogenetic Trees/Animal Genes : TreeFamTRIM36
Homologs : HomoloGeneTRIM36
Homology/Alignments : Family Browser (UCSC)TRIM36
Gene fusions - Rearrangements
Fusion : MitelmanTRIM36/HEXB [5q22.3/5q13.3]  
Fusion : QuiverTRIM36
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM36
dbVarTRIM36
ClinVarTRIM36
MonarchTRIM36
1000_GenomesTRIM36 
Exome Variant ServerTRIM36
GNOMAD BrowserENSG00000152503
Varsome BrowserTRIM36
ACMGTRIM36 variants
VarityQ9NQ86
Genomic Variants (DGV)TRIM36 [DGVbeta]
DECIPHERTRIM36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM36 
Mutations
ICGC Data PortalTRIM36 
TCGA Data PortalTRIM36 
Broad Tumor PortalTRIM36
OASIS PortalTRIM36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM36  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM36
Mutations and Diseases : HGMDTRIM36
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM36
DgiDB (Drug Gene Interaction Database)TRIM36
DoCM (Curated mutations)TRIM36
CIViC (Clinical Interpretations of Variants in Cancer)TRIM36
Cancer3DTRIM36
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM206500    609317   
Orphanet
DisGeNETTRIM36
MedgenTRIM36
Genetic Testing Registry TRIM36
NextProtQ9NQ86 [Medical]
GENETestsTRIM36
Target ValidationTRIM36
Huge Navigator TRIM36 [HugePedia]
ClinGenTRIM36
Clinical trials, drugs, therapy
MyCancerGenomeTRIM36
Protein Interactions : CTDTRIM36
Pharm GKB GenePA38111
PharosQ9NQ86
Clinical trialTRIM36
Miscellaneous
canSAR (ICR)TRIM36
HarmonizomeTRIM36
DataMed IndexTRIM36
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:21 CEST 2021

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