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TRIM39-RPP21 (TRIM39-RPP21 readthrough)

Identity

Other aliasTRIM39R
HGNC (Hugo) TRIM39-RPP21
LocusID (NCBI) 202658
Atlas_Id 75152
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 30329311 and ends at 30346858 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM39-RPP21   38845
Cards
Entrez_Gene (NCBI)TRIM39-RPP21  202658  TRIM39-RPP21 readthrough
AliasesTRIM39R
GeneCards (Weizmann)TRIM39-RPP21
Ensembl hg19 (Hinxton)ENSG00000248167 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248167 [Gene_View]  ENSG00000248167 [Sequence]  chr6:30329311-30346858 [Contig_View]  TRIM39-RPP21 [Vega]
ICGC DataPortalENSG00000248167
TCGA cBioPortalTRIM39-RPP21
AceView (NCBI)TRIM39-RPP21
Genatlas (Paris)TRIM39-RPP21
WikiGenes202658
SOURCE (Princeton)TRIM39-RPP21
Genetics Home Reference (NIH)TRIM39-RPP21
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM39-RPP21  -     chr6:30329311-30346858 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM39-RPP21  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblTRIM39-RPP21 - 6p22.1 [CytoView hg19]  TRIM39-RPP21 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBITRIM39-RPP21 [Mapview hg19]  TRIM39-RPP21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI805914 EU012025
RefSeq transcript (Entrez)NM_001199119
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)TRIM39-RPP21
Cluster EST : UnigeneHs.413493 [ NCBI ]
CGAP (NCI)Hs.413493
Alternative Splicing GalleryENSG00000248167
Gene ExpressionTRIM39-RPP21 [ NCBI-GEO ]   TRIM39-RPP21 [ EBI - ARRAY_EXPRESS ]   TRIM39-RPP21 [ SEEK ]   TRIM39-RPP21 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM39-RPP21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)202658
GTEX Portal (Tissue expression)TRIM39-RPP21
Human Protein AtlasENSG00000248167-TRIM39-RPP21 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRIM39-RPP21
DMDM Disease mutations202658
Blocks (Seattle)TRIM39-RPP21
Human Protein Atlas [tissue]ENSG00000248167-TRIM39-RPP21 [tissue]
Protein Interaction databases
FunCoupENSG00000248167
BioGRIDTRIM39-RPP21
STRING (EMBL)TRIM39-RPP21
ZODIACTRIM39-RPP21
Ontologies - Pathways
Huge Navigator TRIM39-RPP21 [HugePedia]
snp3D : Map Gene to Disease202658
BioCentury BCIQTRIM39-RPP21
ClinGenTRIM39-RPP21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD202658
Clinical trialTRIM39-RPP21
Miscellaneous
canSAR (ICR)TRIM39-RPP21 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM39-RPP21
EVEXTRIM39-RPP21
GoPubMedTRIM39-RPP21
iHOPTRIM39-RPP21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:36:35 CEST 2018

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