Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM41 (tripartite motif containing 41)

Identity

Alias (NCBI)RINCK
HGNC (Hugo) TRIM41
HGNC Alias symbMGC1127
RINCK
HGNC Alias nameRING-finger protein that interacts with C kinase
HGNC Previous nametripartite motif-containing 41
LocusID (NCBI) 90933
Atlas_Id 75154
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 181223281 and ends at 181235808 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CACNG8 (19q13.42) / TRIM41 (5q35.3)TRIM41 (5q35.3) / ASB9 (Xp22.2)TRIM41 (5q35.3) / MALAT1 (11q13.1)
TRIM41 (5q35.3) / PPY (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM41   19013
Cards
Entrez_Gene (NCBI)TRIM41    tripartite motif containing 41
AliasesRINCK
GeneCards (Weizmann)TRIM41
Ensembl hg19 (Hinxton)ENSG00000146063 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146063 [Gene_View]  ENSG00000146063 [Sequence]  chr5:181223281-181235808 [Contig_View]  TRIM41 [Vega]
ICGC DataPortalENSG00000146063
TCGA cBioPortalTRIM41
AceView (NCBI)TRIM41
Genatlas (Paris)TRIM41
SOURCE (Princeton)TRIM41
Genetics Home Reference (NIH)TRIM41
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM41  -     chr5:181223281-181235808 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM41  -     5q35.3   [Description]    (hg19-Feb_2009)
GoldenPathTRIM41 - 5q35.3 [CytoView hg19]  TRIM41 - 5q35.3 [CytoView hg38]
ImmunoBaseENSG00000146063
Genome Data Viewer NCBITRIM41 [Mapview hg19]  
OMIM610530   
Gene and transcription
Genbank (Entrez)AB063180 AB100366 AB100367 AF258579 AK027601
RefSeq transcript (Entrez)NM_033549 NM_201627
Consensus coding sequences : CCDS (NCBI)TRIM41
Gene ExpressionTRIM41 [ NCBI-GEO ]   TRIM41 [ EBI - ARRAY_EXPRESS ]   TRIM41 [ SEEK ]   TRIM41 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM41 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM41 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90933
GTEX Portal (Tissue expression)TRIM41
Human Protein AtlasENSG00000146063-TRIM41 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WV44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WV44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WV44
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ8WV44
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    B30.2/SPRY_sf    Butyrophylin_SPRY    ConA-like_dom_sf    PRY    SPRY_dom    TRIM41_SPRY_PRY    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM41
PDB (RSDB)2EGM   
PDB Europe2EGM   
PDB (PDBSum)2EGM   
PDB (IMB)2EGM   
Structural Biology KnowledgeBase2EGM   
SCOP (Structural Classification of Proteins)2EGM   
CATH (Classification of proteins structures)2EGM   
SuperfamilyQ8WV44
AlphaFold pdb e-kbQ8WV44   
Human Protein Atlas [tissue]ENSG00000146063-TRIM41 [tissue]
HPRD15558
Protein Interaction databases
DIP (DOE-UCLA)Q8WV44
IntAct (EBI)Q8WV44
BioGRIDTRIM41
STRING (EMBL)TRIM41
ZODIACTRIM41
Ontologies - Pathways
QuickGOQ8WV44
Ontology : AmiGOprotein binding  nucleolus  cytoplasm  zinc ion binding  protein ubiquitination  protein ubiquitination  nuclear body  nuclear body  identical protein binding  positive regulation of DNA-binding transcription factor activity  ubiquitin protein ligase activity  cellular response to lipopolysaccharide  cellular response to muramyl dipeptide  
Ontology : EGO-EBIprotein binding  nucleolus  cytoplasm  zinc ion binding  protein ubiquitination  protein ubiquitination  nuclear body  nuclear body  identical protein binding  positive regulation of DNA-binding transcription factor activity  ubiquitin protein ligase activity  cellular response to lipopolysaccharide  cellular response to muramyl dipeptide  
NDEx NetworkTRIM41
Atlas of Cancer Signalling NetworkTRIM41
Wikipedia pathwaysTRIM41
Orthology - Evolution
OrthoDB90933
GeneTree (enSembl)ENSG00000146063
Phylogenetic Trees/Animal Genes : TreeFamTRIM41
Homologs : HomoloGeneTRIM41
Homology/Alignments : Family Browser (UCSC)TRIM41
Gene fusions - Rearrangements
Fusion : QuiverTRIM41
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM41 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM41
dbVarTRIM41
ClinVarTRIM41
MonarchTRIM41
1000_GenomesTRIM41 
Exome Variant ServerTRIM41
GNOMAD BrowserENSG00000146063
Varsome BrowserTRIM41
ACMGTRIM41 variants
VarityQ8WV44
Genomic Variants (DGV)TRIM41 [DGVbeta]
DECIPHERTRIM41 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM41 
Mutations
ICGC Data PortalTRIM41 
TCGA Data PortalTRIM41 
Broad Tumor PortalTRIM41
OASIS PortalTRIM41 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM41  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM41
Mutations and Diseases : HGMDTRIM41
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM41
DgiDB (Drug Gene Interaction Database)TRIM41
DoCM (Curated mutations)TRIM41
CIViC (Clinical Interpretations of Variants in Cancer)TRIM41
Cancer3DTRIM41
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610530   
Orphanet
DisGeNETTRIM41
MedgenTRIM41
Genetic Testing Registry TRIM41
NextProtQ8WV44 [Medical]
GENETestsTRIM41
Target ValidationTRIM41
Huge Navigator TRIM41 [HugePedia]
ClinGenTRIM41
Clinical trials, drugs, therapy
MyCancerGenomeTRIM41
Protein Interactions : CTDTRIM41
Pharm GKB GenePA134918519
PharosQ8WV44
Clinical trialTRIM41
Miscellaneous
canSAR (ICR)TRIM41
HarmonizomeTRIM41
DataMed IndexTRIM41
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:26:54 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.