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TRIM41 (tripartite motif containing 41)

Identity

Alias_namestripartite motif-containing 41
Alias_symbol (synonym)MGC1127
RINCK
Other alias
HGNC (Hugo) TRIM41
LocusID (NCBI) 90933
Atlas_Id 75154
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 181223263 and ends at 181235808 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CACNG8 (19q13.42) / TRIM41 (5q35.3)TRIM41 (5q35.3) / ASB9 (Xp22.2)TRIM41 (5q35.3) / MALAT1 (11q13.1)
TRIM41 (5q35.3) / PPY (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM41   19013
Cards
Entrez_Gene (NCBI)TRIM41  90933  tripartite motif containing 41
AliasesRINCK
GeneCards (Weizmann)TRIM41
Ensembl hg19 (Hinxton)ENSG00000146063 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146063 [Gene_View]  chr5:181223263-181235808 [Contig_View]  TRIM41 [Vega]
ICGC DataPortalENSG00000146063
TCGA cBioPortalTRIM41
AceView (NCBI)TRIM41
Genatlas (Paris)TRIM41
WikiGenes90933
SOURCE (Princeton)TRIM41
Genetics Home Reference (NIH)TRIM41
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM41  -     chr5:181223263-181235808 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM41  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM41 - 5q35.3 [CytoView hg19]  TRIM41 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBITRIM41 [Mapview hg19]  TRIM41 [Mapview hg38]
OMIM610530   
Gene and transcription
Genbank (Entrez)AB063180 AB100366 AB100367 AF258579 AK027601
RefSeq transcript (Entrez)NM_033549 NM_201627
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM41
Cluster EST : UnigeneHs.700303 [ NCBI ]
CGAP (NCI)Hs.700303
Alternative Splicing GalleryENSG00000146063
Gene ExpressionTRIM41 [ NCBI-GEO ]   TRIM41 [ EBI - ARRAY_EXPRESS ]   TRIM41 [ SEEK ]   TRIM41 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM41 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90933
GTEX Portal (Tissue expression)TRIM41
Human Protein AtlasENSG00000146063-TRIM41 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WV44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WV44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WV44
Splice isoforms : SwissVarQ8WV44
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ8WV44
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM41
DMDM Disease mutations90933
Blocks (Seattle)TRIM41
PDB (SRS)2EGM   
PDB (PDBSum)2EGM   
PDB (IMB)2EGM   
PDB (RSDB)2EGM   
Structural Biology KnowledgeBase2EGM   
SCOP (Structural Classification of Proteins)2EGM   
CATH (Classification of proteins structures)2EGM   
SuperfamilyQ8WV44
Human Protein Atlas [tissue]ENSG00000146063-TRIM41 [tissue]
Peptide AtlasQ8WV44
HPRD15558
IPIIPI00414021   IPI00414022   IPI00514646   IPI00827722   IPI00909892   IPI00939940   IPI00965146   IPI00966525   
Protein Interaction databases
DIP (DOE-UCLA)Q8WV44
IntAct (EBI)Q8WV44
FunCoupENSG00000146063
BioGRIDTRIM41
STRING (EMBL)TRIM41
ZODIACTRIM41
Ontologies - Pathways
QuickGOQ8WV44
Ontology : AmiGOprotein binding  nucleolus  cytoplasm  zinc ion binding  protein ubiquitination  nuclear body  transferase activity  identical protein binding  
Ontology : EGO-EBIprotein binding  nucleolus  cytoplasm  zinc ion binding  protein ubiquitination  nuclear body  transferase activity  identical protein binding  
NDEx NetworkTRIM41
Atlas of Cancer Signalling NetworkTRIM41
Wikipedia pathwaysTRIM41
Orthology - Evolution
OrthoDB90933
GeneTree (enSembl)ENSG00000146063
Phylogenetic Trees/Animal Genes : TreeFamTRIM41
HOVERGENQ8WV44
HOGENOMQ8WV44
Homologs : HomoloGeneTRIM41
Homology/Alignments : Family Browser (UCSC)TRIM41
Gene fusions - Rearrangements
Tumor Fusion PortalTRIM41
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM41 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM41
dbVarTRIM41
ClinVarTRIM41
1000_GenomesTRIM41 
Exome Variant ServerTRIM41
ExAC (Exome Aggregation Consortium)ENSG00000146063
GNOMAD BrowserENSG00000146063
Genetic variants : HAPMAP90933
Genomic Variants (DGV)TRIM41 [DGVbeta]
DECIPHERTRIM41 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM41 
Mutations
ICGC Data PortalTRIM41 
TCGA Data PortalTRIM41 
Broad Tumor PortalTRIM41
OASIS PortalTRIM41 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM41  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM41
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM41
DgiDB (Drug Gene Interaction Database)TRIM41
DoCM (Curated mutations)TRIM41 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM41 (select a term)
intoGenTRIM41
Cancer3DTRIM41(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610530   
Orphanet
DisGeNETTRIM41
MedgenTRIM41
Genetic Testing Registry TRIM41
NextProtQ8WV44 [Medical]
TSGene90933
GENETestsTRIM41
Target ValidationTRIM41
Huge Navigator TRIM41 [HugePedia]
snp3D : Map Gene to Disease90933
BioCentury BCIQTRIM41
ClinGenTRIM41
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90933
Chemical/Pharm GKB GenePA134918519
Clinical trialTRIM41
Miscellaneous
canSAR (ICR)TRIM41 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM41
EVEXTRIM41
GoPubMedTRIM41
iHOPTRIM41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:13:18 CET 2017

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