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TRIM43 (tripartite motif containing 43)

Identity

Alias (NCBI)TRIM43A
HGNC (Hugo) TRIM43
HGNC Alias symbTRIM43A
HGNC Previous nametripartite motif-containing 43
LocusID (NCBI) 129868
Atlas_Id 75156
Location 2q11.1  [Link to chromosome band 2q11]
Location_base_pair Starts at 95592018 and ends at 95599771 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRIM43 (2q11.1) / UBE2L3 (22q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TRIM43   19015
Cards
Entrez_Gene (NCBI)TRIM43    tripartite motif containing 43
AliasesTRIM43A
GeneCards (Weizmann)TRIM43
Ensembl hg19 (Hinxton)ENSG00000144015 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144015 [Gene_View]  ENSG00000144015 [Sequence]  chr2:95592018-95599771 [Contig_View]  TRIM43 [Vega]
ICGC DataPortalENSG00000144015
TCGA cBioPortalTRIM43
AceView (NCBI)TRIM43
Genatlas (Paris)TRIM43
SOURCE (Princeton)TRIM43
Genetics Home Reference (NIH)TRIM43
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM43  -     chr2:95592018-95599771 +  2q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM43  -     2q11.1   [Description]    (hg19-Feb_2009)
GoldenPathTRIM43 - 2q11.1 [CytoView hg19]  TRIM43 - 2q11.1 [CytoView hg38]
ImmunoBaseENSG00000144015
genome Data Viewer NCBITRIM43 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AW015073 BC015353
RefSeq transcript (Entrez)NM_138800
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM43
Alternative Splicing GalleryENSG00000144015
Gene ExpressionTRIM43 [ NCBI-GEO ]   TRIM43 [ EBI - ARRAY_EXPRESS ]   TRIM43 [ SEEK ]   TRIM43 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM43 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM43 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129868
GTEX Portal (Tissue expression)TRIM43
Human Protein AtlasENSG00000144015-TRIM43 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BQ3
Splice isoforms : SwissVarQ96BQ3
PhosPhoSitePlusQ96BQ3
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin_SPRY    ConA-like_dom_sf    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00622   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM43
Blocks (Seattle)TRIM43
SuperfamilyQ96BQ3
Human Protein Atlas [tissue]ENSG00000144015-TRIM43 [tissue]
Peptide AtlasQ96BQ3
HPRD15560
IPIIPI00334320   
Protein Interaction databases
DIP (DOE-UCLA)Q96BQ3
IntAct (EBI)Q96BQ3
BioGRIDTRIM43
STRING (EMBL)TRIM43
ZODIACTRIM43
Ontologies - Pathways
QuickGOQ96BQ3
Ontology : AmiGOprotein binding  zinc ion binding  
Ontology : EGO-EBIprotein binding  zinc ion binding  
NDEx NetworkTRIM43
Atlas of Cancer Signalling NetworkTRIM43
Wikipedia pathwaysTRIM43
Orthology - Evolution
OrthoDB129868
GeneTree (enSembl)ENSG00000144015
Phylogenetic Trees/Animal Genes : TreeFamTRIM43
HOGENOMQ96BQ3
Homologs : HomoloGeneTRIM43
Homology/Alignments : Family Browser (UCSC)TRIM43
Gene fusions - Rearrangements
Fusion : QuiverTRIM43
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM43 [hg38]
dbVarTRIM43
ClinVarTRIM43
MonarchTRIM43
1000_GenomesTRIM43 
Exome Variant ServerTRIM43
GNOMAD BrowserENSG00000144015
Varsome BrowserTRIM43
Genomic Variants (DGV)TRIM43 [DGVbeta]
DECIPHERTRIM43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM43 
Mutations
ICGC Data PortalTRIM43 
TCGA Data PortalTRIM43 
Broad Tumor PortalTRIM43
OASIS PortalTRIM43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM43  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM43
Mutations and Diseases : HGMDTRIM43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM43
DgiDB (Drug Gene Interaction Database)TRIM43
DoCM (Curated mutations)TRIM43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM43 (select a term)
intoGenTRIM43
Cancer3DTRIM43(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRIM43
MedgenTRIM43
Genetic Testing Registry TRIM43
NextProtQ96BQ3 [Medical]
GENETestsTRIM43
Target ValidationTRIM43
Huge Navigator TRIM43 [HugePedia]
ClinGenTRIM43
Clinical trials, drugs, therapy
MyCancerGenomeTRIM43
Protein Interactions : CTD
Pharm GKB GenePA134936799
Clinical trialTRIM43
Miscellaneous
canSAR (ICR)TRIM43 (select the gene name)
HarmonizomeTRIM43
DataMed IndexTRIM43
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM43
EVEXTRIM43
GoPubMedTRIM43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:33:10 CET 2020

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