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TRIM43 (tripartite motif containing 43)

Identity

Alias_namestripartite motif-containing 43
Alias_symbol (synonym)TRIM43A
Other alias
HGNC (Hugo) TRIM43
LocusID (NCBI) 129868
Atlas_Id 75156
Location 2q11.1  [Link to chromosome band 2q11]
Location_base_pair Starts at 95592018 and ends at 95599771 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRIM43 (2q11.1) / UBE2L3 (22q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM43   19015
Cards
Entrez_Gene (NCBI)TRIM43  129868  tripartite motif containing 43
AliasesTRIM43A
GeneCards (Weizmann)TRIM43
Ensembl hg19 (Hinxton)ENSG00000144015 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144015 [Gene_View]  chr2:95592018-95599771 [Contig_View]  TRIM43 [Vega]
ICGC DataPortalENSG00000144015
TCGA cBioPortalTRIM43
AceView (NCBI)TRIM43
Genatlas (Paris)TRIM43
WikiGenes129868
SOURCE (Princeton)TRIM43
Genetics Home Reference (NIH)TRIM43
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM43  -     chr2:95592018-95599771 +  2q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM43  -     2q11.1   [Description]    (hg19-Feb_2009)
EnsemblTRIM43 - 2q11.1 [CytoView hg19]  TRIM43 - 2q11.1 [CytoView hg38]
Mapping of homologs : NCBITRIM43 [Mapview hg19]  TRIM43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW015073 BC015353 EU447016
RefSeq transcript (Entrez)NM_138800
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM43
Cluster EST : UnigeneHs.232026 [ NCBI ]
CGAP (NCI)Hs.232026
Alternative Splicing GalleryENSG00000144015
Gene ExpressionTRIM43 [ NCBI-GEO ]   TRIM43 [ EBI - ARRAY_EXPRESS ]   TRIM43 [ SEEK ]   TRIM43 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129868
GTEX Portal (Tissue expression)TRIM43
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BQ3
Splice isoforms : SwissVarQ96BQ3
PhosPhoSitePlusQ96BQ3
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00622   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM43
DMDM Disease mutations129868
Blocks (Seattle)TRIM43
SuperfamilyQ96BQ3
Human Protein AtlasENSG00000144015
Peptide AtlasQ96BQ3
HPRD15560
IPIIPI00334320   
Protein Interaction databases
DIP (DOE-UCLA)Q96BQ3
IntAct (EBI)Q96BQ3
FunCoupENSG00000144015
BioGRIDTRIM43
STRING (EMBL)TRIM43
ZODIACTRIM43
Ontologies - Pathways
QuickGOQ96BQ3
Ontology : AmiGOprotein binding  intracellular  zinc ion binding  
Ontology : EGO-EBIprotein binding  intracellular  zinc ion binding  
NDEx NetworkTRIM43
Atlas of Cancer Signalling NetworkTRIM43
Wikipedia pathwaysTRIM43
Orthology - Evolution
OrthoDB129868
GeneTree (enSembl)ENSG00000144015
Phylogenetic Trees/Animal Genes : TreeFamTRIM43
HOVERGENQ96BQ3
HOGENOMQ96BQ3
Homologs : HomoloGeneTRIM43
Homology/Alignments : Family Browser (UCSC)TRIM43
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM43
dbVarTRIM43
ClinVarTRIM43
1000_GenomesTRIM43 
Exome Variant ServerTRIM43
ExAC (Exome Aggregation Consortium)TRIM43 (select the gene name)
Genetic variants : HAPMAP129868
Genomic Variants (DGV)TRIM43 [DGVbeta]
DECIPHERTRIM43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM43 
Mutations
ICGC Data PortalTRIM43 
TCGA Data PortalTRIM43 
Broad Tumor PortalTRIM43
OASIS PortalTRIM43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM43
DgiDB (Drug Gene Interaction Database)TRIM43
DoCM (Curated mutations)TRIM43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM43 (select a term)
intoGenTRIM43
Cancer3DTRIM43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM43
Genetic Testing Registry TRIM43
NextProtQ96BQ3 [Medical]
TSGene129868
GENETestsTRIM43
Target ValidationTRIM43
Huge Navigator TRIM43 [HugePedia]
snp3D : Map Gene to Disease129868
BioCentury BCIQTRIM43
ClinGenTRIM43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129868
Chemical/Pharm GKB GenePA134936799
Clinical trialTRIM43
Miscellaneous
canSAR (ICR)TRIM43 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM43
EVEXTRIM43
GoPubMedTRIM43
iHOPTRIM43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:05 CEST 2017

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