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TRIM43B (tripartite motif containing 43B)

Identity

Alias_namestripartite motif-containing 43B
Other alias-
HGNC (Hugo) TRIM43B
LocusID (NCBI) 653192
Atlas_Id 75157
Location 2q11.1  [Link to chromosome band 2q11]
Location_base_pair Starts at 96142715 and ends at 96150479 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM43B   37146
Cards
Entrez_Gene (NCBI)TRIM43B  653192  tripartite motif containing 43B
Aliases
GeneCards (Weizmann)TRIM43B
Ensembl hg19 (Hinxton) [Gene_View]  chr2:96142715-96150479 [Contig_View]  TRIM43B [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:96142715-96150479 [Contig_View]  TRIM43B [Vega]
TCGA cBioPortalTRIM43B
AceView (NCBI)TRIM43B
Genatlas (Paris)TRIM43B
WikiGenes653192
SOURCE (Princeton)TRIM43B
Genetics Home Reference (NIH)TRIM43B
Genomic and cartography
GoldenPath hg19 (UCSC)TRIM43B  -     chr2:96142715-96150479 -  2q11.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRIM43B  -     2q11.1   [Description]    (hg38-Dec_2013)
EnsemblTRIM43B - 2q11.1 [CytoView hg19]  TRIM43B - 2q11.1 [CytoView hg38]
Mapping of homologs : NCBITRIM43B [Mapview hg19]  TRIM43B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001164464
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929303
Consensus coding sequences : CCDS (NCBI)TRIM43B
Cluster EST : UnigeneHs.723811 [ NCBI ]
CGAP (NCI)Hs.723811
Gene ExpressionTRIM43B [ NCBI-GEO ]   TRIM43B [ EBI - ARRAY_EXPRESS ]   TRIM43B [ SEEK ]   TRIM43B [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM43B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653192
GTEX Portal (Tissue expression)TRIM43B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCK2
Splice isoforms : SwissVarA6NCK2
PhosPhoSitePlusA6NCK2
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00622   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM43B
DMDM Disease mutations653192
Blocks (Seattle)TRIM43B
SuperfamilyA6NCK2
Peptide AtlasA6NCK2
IPIIPI00335269   
Protein Interaction databases
DIP (DOE-UCLA)A6NCK2
IntAct (EBI)A6NCK2
BioGRIDTRIM43B
STRING (EMBL)TRIM43B
ZODIACTRIM43B
Ontologies - Pathways
QuickGOA6NCK2
Ontology : AmiGOintracellular  zinc ion binding  
Ontology : EGO-EBIintracellular  zinc ion binding  
NDEx NetworkTRIM43B
Atlas of Cancer Signalling NetworkTRIM43B
Wikipedia pathwaysTRIM43B
Orthology - Evolution
OrthoDB653192
Phylogenetic Trees/Animal Genes : TreeFamTRIM43B
HOVERGENA6NCK2
HOGENOMA6NCK2
Homologs : HomoloGeneTRIM43B
Homology/Alignments : Family Browser (UCSC)TRIM43B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM43B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM43B
dbVarTRIM43B
ClinVarTRIM43B
1000_GenomesTRIM43B 
Exome Variant ServerTRIM43B
ExAC (Exome Aggregation Consortium)TRIM43B (select the gene name)
Genetic variants : HAPMAP653192
Genomic Variants (DGV)TRIM43B [DGVbeta]
DECIPHER (Syndromes)2:96142715-96150479  
CONAN: Copy Number AnalysisTRIM43B 
Mutations
ICGC Data PortalTRIM43B 
TCGA Data PortalTRIM43B 
Broad Tumor PortalTRIM43B
OASIS PortalTRIM43B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRIM43B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM43B
DgiDB (Drug Gene Interaction Database)TRIM43B
DoCM (Curated mutations)TRIM43B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM43B (select a term)
intoGenTRIM43B
Cancer3DTRIM43B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM43B
Genetic Testing Registry TRIM43B
NextProtA6NCK2 [Medical]
TSGene653192
GENETestsTRIM43B
Huge Navigator TRIM43B [HugePedia]
snp3D : Map Gene to Disease653192
BioCentury BCIQTRIM43B
ClinGenTRIM43B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653192
Chemical/Pharm GKB GenePA165697592
Clinical trialTRIM43B
Miscellaneous
canSAR (ICR)TRIM43B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM43B
EVEXTRIM43B
GoPubMedTRIM43B
iHOPTRIM43B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:42 CET 2017

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