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TRIM43B (tripartite motif containing 43B)

Identity

Alias (NCBI)-
HGNC (Hugo) TRIM43B
HGNC Previous nametripartite motif-containing 43B
LocusID (NCBI) 653192
Atlas_Id 75157
Location 2q11.1  [Link to chromosome band 2q11]
Location_base_pair Starts at 95476967 and ends at 95484731 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM43B   37146
Cards
Entrez_Gene (NCBI)TRIM43B    tripartite motif containing 43B
Aliases
GeneCards (Weizmann)TRIM43B
Ensembl hg19 (Hinxton)ENSG00000144010 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144010 [Gene_View]  ENSG00000144010 [Sequence]  chr2:95476967-95484731 [Contig_View]  TRIM43B [Vega]
ICGC DataPortalENSG00000144010
TCGA cBioPortalTRIM43B
AceView (NCBI)TRIM43B
Genatlas (Paris)TRIM43B
SOURCE (Princeton)TRIM43B
Genetics Home Reference (NIH)TRIM43B
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM43B  -     chr2:95476967-95484731 -  2q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM43B  -     2q11.1   [Description]    (hg19-Feb_2009)
GoldenPathTRIM43B - 2q11.1 [CytoView hg19]  TRIM43B - 2q11.1 [CytoView hg38]
ImmunoBaseENSG00000144010
Genome Data Viewer NCBITRIM43B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001164464
Consensus coding sequences : CCDS (NCBI)TRIM43B
Gene ExpressionTRIM43B [ NCBI-GEO ]   TRIM43B [ EBI - ARRAY_EXPRESS ]   TRIM43B [ SEEK ]   TRIM43B [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM43B [ Firebrowse - Broad ]
GenevisibleExpression of TRIM43B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653192
GTEX Portal (Tissue expression)TRIM43B
Human Protein AtlasENSG00000144010-TRIM43B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCK2
PhosPhoSitePlusA6NCK2
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    B30.2/SPRY_sf    Butyrophylin_SPRY    ConA-like_dom_sf    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00622   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM43B
SuperfamilyA6NCK2
AlphaFold pdb e-kbA6NCK2   
Human Protein Atlas [tissue]ENSG00000144010-TRIM43B [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A6NCK2
IntAct (EBI)A6NCK2
BioGRIDTRIM43B
STRING (EMBL)TRIM43B
ZODIACTRIM43B
Ontologies - Pathways
QuickGOA6NCK2
Ontology : AmiGOcytoplasm  zinc ion binding  regulation of gene expression  protein ubiquitination  innate immune response  ubiquitin protein ligase activity  
Ontology : EGO-EBIcytoplasm  zinc ion binding  regulation of gene expression  protein ubiquitination  innate immune response  ubiquitin protein ligase activity  
NDEx NetworkTRIM43B
Atlas of Cancer Signalling NetworkTRIM43B
Wikipedia pathwaysTRIM43B
Orthology - Evolution
OrthoDB653192
GeneTree (enSembl)ENSG00000144010
Phylogenetic Trees/Animal Genes : TreeFamTRIM43B
Homologs : HomoloGeneTRIM43B
Homology/Alignments : Family Browser (UCSC)TRIM43B
Gene fusions - Rearrangements
Fusion : QuiverTRIM43B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM43B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM43B
dbVarTRIM43B
ClinVarTRIM43B
MonarchTRIM43B
1000_GenomesTRIM43B 
Exome Variant ServerTRIM43B
GNOMAD BrowserENSG00000144010
Varsome BrowserTRIM43B
ACMGTRIM43B variants
VarityA6NCK2
Genomic Variants (DGV)TRIM43B [DGVbeta]
DECIPHERTRIM43B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM43B 
Mutations
ICGC Data PortalTRIM43B 
TCGA Data PortalTRIM43B 
Broad Tumor PortalTRIM43B
OASIS PortalTRIM43B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM43B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM43B
Mutations and Diseases : HGMDTRIM43B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM43B
DgiDB (Drug Gene Interaction Database)TRIM43B
DoCM (Curated mutations)TRIM43B
CIViC (Clinical Interpretations of Variants in Cancer)TRIM43B
Cancer3DTRIM43B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRIM43B
MedgenTRIM43B
Genetic Testing Registry TRIM43B
NextProtA6NCK2 [Medical]
GENETestsTRIM43B
Target ValidationTRIM43B
Huge Navigator TRIM43B [HugePedia]
ClinGenTRIM43B
Clinical trials, drugs, therapy
MyCancerGenomeTRIM43B
Protein Interactions : CTDTRIM43B
Pharm GKB GenePA165697592
PharosA6NCK2
Clinical trialTRIM43B
Miscellaneous
canSAR (ICR)TRIM43B
HarmonizomeTRIM43B
DataMed IndexTRIM43B
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM43B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:54 CEST 2021

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