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TRIM44 (tripartite motif containing 44)

Identity

Alias (NCBI)AN3
DIPB
HSA249128
MC7
HGNC (Hugo) TRIM44
HGNC Alias symbDIPB
MC7
HGNC Previous nametripartite motif-containing 44
LocusID (NCBI) 54765
Atlas_Id 55671
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 35662775 and ends at 35818007 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAPRIN1 (11p13) / TRIM44 (11p13)LDLRAD3 (11p13) / TRIM44 (11p13)PRR5L (11p13) / TRIM44 (11p13)
PSME3 (17q21.31) / TRIM44 (11p13)TRIM44 (11p13) / ARRB1 (11q13.4)TRIM44 (11p13) / TRIM44 (11p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM44   19016
Cards
Entrez_Gene (NCBI)TRIM44    tripartite motif containing 44
AliasesAN3; DIPB; HSA249128; MC7
GeneCards (Weizmann)TRIM44
Ensembl hg19 (Hinxton)ENSG00000166326 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166326 [Gene_View]  ENSG00000166326 [Sequence]  chr11:35662775-35818007 [Contig_View]  TRIM44 [Vega]
ICGC DataPortalENSG00000166326
TCGA cBioPortalTRIM44
AceView (NCBI)TRIM44
Genatlas (Paris)TRIM44
SOURCE (Princeton)TRIM44
Genetics Home Reference (NIH)TRIM44
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM44  -     chr11:35662775-35818007 +  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM44  -     11p13   [Description]    (hg19-Feb_2009)
GoldenPathTRIM44 - 11p13 [CytoView hg19]  TRIM44 - 11p13 [CytoView hg38]
ImmunoBaseENSG00000166326
Genome Data Viewer NCBITRIM44 [Mapview hg19]  
OMIM612298   617142   
Gene and transcription
Genbank (Entrez)AJ249128 AK021823 AK074242 BC013166 BC024031
RefSeq transcript (Entrez)NM_017583
Consensus coding sequences : CCDS (NCBI)TRIM44
Gene ExpressionTRIM44 [ NCBI-GEO ]   TRIM44 [ EBI - ARRAY_EXPRESS ]   TRIM44 [ SEEK ]   TRIM44 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM44 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM44 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54765
GTEX Portal (Tissue expression)TRIM44
Human Protein AtlasENSG00000166326-TRIM44 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DX7
PhosPhoSitePlusQ96DX7
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)   
Domains : Interpro (EBI)Znf_B-box   
Domain families : Pfam (Sanger)zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  
Conserved Domain (NCBI)TRIM44
SuperfamilyQ96DX7
AlphaFold pdb e-kbQ96DX7   
Human Protein Atlas [tissue]ENSG00000166326-TRIM44 [tissue]
HPRD15561
Protein Interaction databases
DIP (DOE-UCLA)Q96DX7
IntAct (EBI)Q96DX7
BioGRIDTRIM44
STRING (EMBL)TRIM44
ZODIACTRIM44
Ontologies - Pathways
QuickGOQ96DX7
Ontology : AmiGOpositive regulation of cytokine-mediated signaling pathway  positive regulation of defense response to virus by host  protein binding  cytoplasm  zinc ion binding  regulation of gene expression  protein ubiquitination  positive regulation of transcription, DNA-templated  protein stabilization  ubiquitin protein ligase activity  negative regulation of protein K48-linked ubiquitination  positive regulation of NIK/NF-kappaB signaling  
Ontology : EGO-EBIpositive regulation of cytokine-mediated signaling pathway  positive regulation of defense response to virus by host  protein binding  cytoplasm  zinc ion binding  regulation of gene expression  protein ubiquitination  positive regulation of transcription, DNA-templated  protein stabilization  ubiquitin protein ligase activity  negative regulation of protein K48-linked ubiquitination  positive regulation of NIK/NF-kappaB signaling  
NDEx NetworkTRIM44
Atlas of Cancer Signalling NetworkTRIM44
Wikipedia pathwaysTRIM44
Orthology - Evolution
OrthoDB54765
GeneTree (enSembl)ENSG00000166326
Phylogenetic Trees/Animal Genes : TreeFamTRIM44
Homologs : HomoloGeneTRIM44
Homology/Alignments : Family Browser (UCSC)TRIM44
Gene fusions - Rearrangements
Fusion : QuiverTRIM44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM44
dbVarTRIM44
ClinVarTRIM44
MonarchTRIM44
1000_GenomesTRIM44 
Exome Variant ServerTRIM44
GNOMAD BrowserENSG00000166326
Varsome BrowserTRIM44
ACMGTRIM44 variants
VarityQ96DX7
Genomic Variants (DGV)TRIM44 [DGVbeta]
DECIPHERTRIM44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM44 
Mutations
ICGC Data PortalTRIM44 
TCGA Data PortalTRIM44 
Broad Tumor PortalTRIM44
OASIS PortalTRIM44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM44  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM44
Mutations and Diseases : HGMDTRIM44
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM44
DgiDB (Drug Gene Interaction Database)TRIM44
DoCM (Curated mutations)TRIM44
CIViC (Clinical Interpretations of Variants in Cancer)TRIM44
Cancer3DTRIM44
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612298    617142   
Orphanet19593   
DisGeNETTRIM44
MedgenTRIM44
Genetic Testing Registry TRIM44
NextProtQ96DX7 [Medical]
GENETestsTRIM44
Target ValidationTRIM44
Huge Navigator TRIM44 [HugePedia]
ClinGenTRIM44
Clinical trials, drugs, therapy
MyCancerGenomeTRIM44
Protein Interactions : CTDTRIM44
Pharm GKB GenePA134906584
PharosQ96DX7
Clinical trialTRIM44
Miscellaneous
canSAR (ICR)TRIM44
HarmonizomeTRIM44
DataMed IndexTRIM44
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:21 CEST 2021

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