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TRIM44 (tripartite motif containing 44)

Identity

Alias_namestripartite motif-containing 44
Alias_symbol (synonym)DIPB
MC7
Other aliasAN3
HSA249128
HGNC (Hugo) TRIM44
LocusID (NCBI) 54765
Atlas_Id 55671
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 35662752 and ends at 35811053 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAPRIN1 (11p13) / TRIM44 (11p13)LDLRAD3 (11p13) / TRIM44 (11p13)PRR5L (11p13) / TRIM44 (11p13)
PSME3 (17q21.31) / TRIM44 (11p13)TRIM44 (11p13) / ARRB1 (11q13.4)TRIM44 (11p13) / TRIM44 (11p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM44   19016
Cards
Entrez_Gene (NCBI)TRIM44  54765  tripartite motif containing 44
AliasesAN3; DIPB; HSA249128; MC7
GeneCards (Weizmann)TRIM44
Ensembl hg19 (Hinxton)ENSG00000166326 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166326 [Gene_View]  chr11:35662752-35811053 [Contig_View]  TRIM44 [Vega]
ICGC DataPortalENSG00000166326
TCGA cBioPortalTRIM44
AceView (NCBI)TRIM44
Genatlas (Paris)TRIM44
WikiGenes54765
SOURCE (Princeton)TRIM44
Genetics Home Reference (NIH)TRIM44
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM44  -     chr11:35662752-35811053 +  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM44  -     11p13   [Description]    (hg19-Feb_2009)
EnsemblTRIM44 - 11p13 [CytoView hg19]  TRIM44 - 11p13 [CytoView hg38]
Mapping of homologs : NCBITRIM44 [Mapview hg19]  TRIM44 [Mapview hg38]
OMIM612298   617142   
Gene and transcription
Genbank (Entrez)AJ249128 AK021823 AK074242 BC013166 BC024031
RefSeq transcript (Entrez)NM_017583
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM44
Cluster EST : UnigeneHs.715570 [ NCBI ]
CGAP (NCI)Hs.715570
Alternative Splicing GalleryENSG00000166326
Gene ExpressionTRIM44 [ NCBI-GEO ]   TRIM44 [ EBI - ARRAY_EXPRESS ]   TRIM44 [ SEEK ]   TRIM44 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54765
GTEX Portal (Tissue expression)TRIM44
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DX7
Splice isoforms : SwissVarQ96DX7
PhosPhoSitePlusQ96DX7
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)   
Domains : Interpro (EBI)Znf_B-box   
Domain families : Pfam (Sanger)zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  
Conserved Domain (NCBI)TRIM44
DMDM Disease mutations54765
Blocks (Seattle)TRIM44
SuperfamilyQ96DX7
Human Protein AtlasENSG00000166326
Peptide AtlasQ96DX7
HPRD15561
IPIIPI00294754   
Protein Interaction databases
DIP (DOE-UCLA)Q96DX7
IntAct (EBI)Q96DX7
FunCoupENSG00000166326
BioGRIDTRIM44
STRING (EMBL)TRIM44
ZODIACTRIM44
Ontologies - Pathways
QuickGOQ96DX7
Ontology : AmiGOprotein binding  intracellular  zinc ion binding  regulation of gene expression  
Ontology : EGO-EBIprotein binding  intracellular  zinc ion binding  regulation of gene expression  
NDEx NetworkTRIM44
Atlas of Cancer Signalling NetworkTRIM44
Wikipedia pathwaysTRIM44
Orthology - Evolution
OrthoDB54765
GeneTree (enSembl)ENSG00000166326
Phylogenetic Trees/Animal Genes : TreeFamTRIM44
HOVERGENQ96DX7
HOGENOMQ96DX7
Homologs : HomoloGeneTRIM44
Homology/Alignments : Family Browser (UCSC)TRIM44
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM44
dbVarTRIM44
ClinVarTRIM44
1000_GenomesTRIM44 
Exome Variant ServerTRIM44
ExAC (Exome Aggregation Consortium)TRIM44 (select the gene name)
Genetic variants : HAPMAP54765
Genomic Variants (DGV)TRIM44 [DGVbeta]
DECIPHERTRIM44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM44 
Mutations
ICGC Data PortalTRIM44 
TCGA Data PortalTRIM44 
Broad Tumor PortalTRIM44
OASIS PortalTRIM44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM44
DgiDB (Drug Gene Interaction Database)TRIM44
DoCM (Curated mutations)TRIM44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM44 (select a term)
intoGenTRIM44
Cancer3DTRIM44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612298    617142   
Orphanet19593   
MedgenTRIM44
Genetic Testing Registry TRIM44
NextProtQ96DX7 [Medical]
TSGene54765
GENETestsTRIM44
Target ValidationTRIM44
Huge Navigator TRIM44 [HugePedia]
snp3D : Map Gene to Disease54765
BioCentury BCIQTRIM44
ClinGenTRIM44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54765
Chemical/Pharm GKB GenePA134906584
Clinical trialTRIM44
Miscellaneous
canSAR (ICR)TRIM44 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM44
EVEXTRIM44
GoPubMedTRIM44
iHOPTRIM44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:00:52 CEST 2017

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