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TRIM46 (tripartite motif containing 46)

Identity

Alias_namestripartite motif-containing 46
Alias_symbol (synonym)FLJ23229
TRIFIC
Other aliasGENEY
HGNC (Hugo) TRIM46
LocusID (NCBI) 80128
Atlas_Id 75159
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155173787 and ends at 155184971 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AZIN1 (8q22.3) / TRIM46 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM46   19019
Cards
Entrez_Gene (NCBI)TRIM46  80128  tripartite motif containing 46
AliasesGENEY; TRIFIC
GeneCards (Weizmann)TRIM46
Ensembl hg19 (Hinxton)ENSG00000163462 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163462 [Gene_View]  chr1:155173787-155184971 [Contig_View]  TRIM46 [Vega]
ICGC DataPortalENSG00000163462
TCGA cBioPortalTRIM46
AceView (NCBI)TRIM46
Genatlas (Paris)TRIM46
WikiGenes80128
SOURCE (Princeton)TRIM46
Genetics Home Reference (NIH)TRIM46
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM46  -     chr1:155173787-155184971 +  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM46  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblTRIM46 - 1q22 [CytoView hg19]  TRIM46 - 1q22 [CytoView hg38]
Mapping of homologs : NCBITRIM46 [Mapview hg19]  TRIM46 [Mapview hg38]
OMIM600986   
Gene and transcription
Genbank (Entrez)AK026882 AK090504 AK096158 AK128139 AK225075
RefSeq transcript (Entrez)NM_001256599 NM_001256600 NM_001256601 NM_001282378 NM_001282379 NM_025058
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM46
Cluster EST : UnigeneHs.287735 [ NCBI ]
CGAP (NCI)Hs.287735
Alternative Splicing GalleryENSG00000163462
Gene ExpressionTRIM46 [ NCBI-GEO ]   TRIM46 [ EBI - ARRAY_EXPRESS ]   TRIM46 [ SEEK ]   TRIM46 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80128
GTEX Portal (Tissue expression)TRIM46
Human Protein AtlasENSG00000163462-TRIM46 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4K8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4K8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4K8
Splice isoforms : SwissVarQ7Z4K8
PhosPhoSitePlusQ7Z4K8
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    COS (PS51262)    FN3 (PS50853)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)   
Domains : Interpro (EBI)B30.2/SPRY    ConA-like_dom    COS_domain    FN3_dom    Ig-like_fold    Znf-RING_LisH    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam00643    pfam13445   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM46
DMDM Disease mutations80128
Blocks (Seattle)TRIM46
SuperfamilyQ7Z4K8
Human Protein Atlas [tissue]ENSG00000163462-TRIM46 [tissue]
Peptide AtlasQ7Z4K8
HPRD15563
IPIIPI00376002   IPI00414243   IPI00443936   IPI00479098   IPI01015505   IPI00922093   IPI00646833   IPI00641527   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4K8
IntAct (EBI)Q7Z4K8
FunCoupENSG00000163462
BioGRIDTRIM46
STRING (EMBL)TRIM46
ZODIACTRIM46
Ontologies - Pathways
QuickGOQ7Z4K8
Ontology : AmiGOmicrotubule bundle formation  neuron migration  axonogenesis  zinc ion binding  axon initial segment  anterograde synaptic vesicle transport  protein localization to axon  axon cytoplasm  proximal neuron projection  
Ontology : EGO-EBImicrotubule bundle formation  neuron migration  axonogenesis  zinc ion binding  axon initial segment  anterograde synaptic vesicle transport  protein localization to axon  axon cytoplasm  proximal neuron projection  
NDEx NetworkTRIM46
Atlas of Cancer Signalling NetworkTRIM46
Wikipedia pathwaysTRIM46
Orthology - Evolution
OrthoDB80128
GeneTree (enSembl)ENSG00000163462
Phylogenetic Trees/Animal Genes : TreeFamTRIM46
HOVERGENQ7Z4K8
HOGENOMQ7Z4K8
Homologs : HomoloGeneTRIM46
Homology/Alignments : Family Browser (UCSC)TRIM46
Gene fusions - Rearrangements
Tumor Fusion PortalTRIM46
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM46
dbVarTRIM46
ClinVarTRIM46
1000_GenomesTRIM46 
Exome Variant ServerTRIM46
ExAC (Exome Aggregation Consortium)ENSG00000163462
GNOMAD BrowserENSG00000163462
Genetic variants : HAPMAP80128
Genomic Variants (DGV)TRIM46 [DGVbeta]
DECIPHERTRIM46 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM46 
Mutations
ICGC Data PortalTRIM46 
TCGA Data PortalTRIM46 
Broad Tumor PortalTRIM46
OASIS PortalTRIM46 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM46  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM46
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM46
DgiDB (Drug Gene Interaction Database)TRIM46
DoCM (Curated mutations)TRIM46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM46 (select a term)
intoGenTRIM46
Cancer3DTRIM46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600986   
Orphanet
DisGeNETTRIM46
MedgenTRIM46
Genetic Testing Registry TRIM46
NextProtQ7Z4K8 [Medical]
TSGene80128
GENETestsTRIM46
Target ValidationTRIM46
Huge Navigator TRIM46 [HugePedia]
snp3D : Map Gene to Disease80128
BioCentury BCIQTRIM46
ClinGenTRIM46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80128
Chemical/Pharm GKB GenePA134914315
Clinical trialTRIM46
Miscellaneous
canSAR (ICR)TRIM46 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM46
EVEXTRIM46
GoPubMedTRIM46
iHOPTRIM46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:03:31 CET 2017

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