TRIM47 (tripartite motif containing 47)

2017-10-01  

Identity

HGNC
TRIM47
LOCATION
17q25.1
LOCUSID
91107
ALIAS
GOA,RNF100
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 91107
MIM: 611041
HGNC: 19020
Ensembl: ENSG00000132481

Variants:

dbSNP: 91107
ClinVar: 91107
TCGA: ENSG00000132481
COSMIC: TRIM47

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000132481ENST00000254816Q96LD4
ENSG00000132481ENST00000585333K7EQ30
ENSG00000132481ENST00000586495K7EJ63
ENSG00000132481ENST00000587339A0A0M3HER3

Expression (GTEx)

0
50
100
150
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
268734352016Increased Expression of Tripartite Motif (TRIM) 47 Is a Negative Prognostic Predictor in Human Prostate Cancer.8
281869942017TRIM47 overexpression is a poor prognostic factor and contributes to carcinogenesis in non-small cell lung carcinoma.5
309793742019TRIM47 is up-regulated in colorectal cancer, promoting ubiquitination and degradation of SMAD4.4
275838432016Analysis of genetic polymorphisms associated with leukoaraiosis in the southern Chinese population: A case-control study.3

Citation

Dessen P

TRIM47 (tripartite motif containing 47)

Atlas Genet Cytogenet Oncol Haematol. 2017-10-01

Online version: http://atlasgeneticsoncology.org/gene/57159/trim47