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TRIM47 (tripartite motif containing 47)

Identity

Alias_namestripartite motif-containing 47
Alias_symbol (synonym)GOA
RNF100
Other alias
HGNC (Hugo) TRIM47
LocusID (NCBI) 91107
Atlas_Id 75160
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75874164 and ends at 75878575 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SCN4A (17q23.3) / TRIM47 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM47   19020
Cards
Entrez_Gene (NCBI)TRIM47  91107  tripartite motif containing 47
AliasesGOA; RNF100
GeneCards (Weizmann)TRIM47
Ensembl hg19 (Hinxton)ENSG00000132481 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132481 [Gene_View]  chr17:75874164-75878575 [Contig_View]  TRIM47 [Vega]
ICGC DataPortalENSG00000132481
TCGA cBioPortalTRIM47
AceView (NCBI)TRIM47
Genatlas (Paris)TRIM47
WikiGenes91107
SOURCE (Princeton)TRIM47
Genetics Home Reference (NIH)TRIM47
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM47  -     chr17:75874164-75878575 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM47  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblTRIM47 - 17q25.1 [CytoView hg19]  TRIM47 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBITRIM47 [Mapview hg19]  TRIM47 [Mapview hg38]
OMIM611041   
Gene and transcription
Genbank (Entrez)AY026763 BC006153 BC009225 BC017299 BG385464
RefSeq transcript (Entrez)NM_033452
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM47
Cluster EST : UnigeneHs.293660 [ NCBI ]
CGAP (NCI)Hs.293660
Alternative Splicing GalleryENSG00000132481
Gene ExpressionTRIM47 [ NCBI-GEO ]   TRIM47 [ EBI - ARRAY_EXPRESS ]   TRIM47 [ SEEK ]   TRIM47 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91107
GTEX Portal (Tissue expression)TRIM47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LD4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LD4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LD4
Splice isoforms : SwissVarQ96LD4
PhosPhoSitePlusQ96LD4
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    ConA-like_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM47
DMDM Disease mutations91107
Blocks (Seattle)TRIM47
SuperfamilyQ96LD4
Human Protein AtlasENSG00000132481
Peptide AtlasQ96LD4
HPRD15564
IPIIPI00307165   
Protein Interaction databases
DIP (DOE-UCLA)Q96LD4
IntAct (EBI)Q96LD4
FunCoupENSG00000132481
BioGRIDTRIM47
STRING (EMBL)TRIM47
ZODIACTRIM47
Ontologies - Pathways
QuickGOQ96LD4
Ontology : AmiGOnucleus  cytosol  zinc ion binding  
Ontology : EGO-EBInucleus  cytosol  zinc ion binding  
NDEx NetworkTRIM47
Atlas of Cancer Signalling NetworkTRIM47
Wikipedia pathwaysTRIM47
Orthology - Evolution
OrthoDB91107
GeneTree (enSembl)ENSG00000132481
Phylogenetic Trees/Animal Genes : TreeFamTRIM47
HOVERGENQ96LD4
HOGENOMQ96LD4
Homologs : HomoloGeneTRIM47
Homology/Alignments : Family Browser (UCSC)TRIM47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM47
dbVarTRIM47
ClinVarTRIM47
1000_GenomesTRIM47 
Exome Variant ServerTRIM47
ExAC (Exome Aggregation Consortium)TRIM47 (select the gene name)
Genetic variants : HAPMAP91107
Genomic Variants (DGV)TRIM47 [DGVbeta]
DECIPHERTRIM47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM47 
Mutations
ICGC Data PortalTRIM47 
TCGA Data PortalTRIM47 
Broad Tumor PortalTRIM47
OASIS PortalTRIM47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM47
DgiDB (Drug Gene Interaction Database)TRIM47
DoCM (Curated mutations)TRIM47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM47 (select a term)
intoGenTRIM47
Cancer3DTRIM47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611041   
Orphanet
MedgenTRIM47
Genetic Testing Registry TRIM47
NextProtQ96LD4 [Medical]
TSGene91107
GENETestsTRIM47
Target ValidationTRIM47
Huge Navigator TRIM47 [HugePedia]
snp3D : Map Gene to Disease91107
BioCentury BCIQTRIM47
ClinGenTRIM47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91107
Chemical/Pharm GKB GenePA134883590
Clinical trialTRIM47
Miscellaneous
canSAR (ICR)TRIM47 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM47
EVEXTRIM47
GoPubMedTRIM47
iHOPTRIM47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:32 CEST 2017

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