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TRIM48 (tripartite motif containing 48)

Identity

Alias_namestripartite motif-containing 48
Alias_symbol (synonym)RNF101
Other alias
HGNC (Hugo) TRIM48
LocusID (NCBI) 79097
Atlas_Id 75161
Location 11q11  [Link to chromosome band 11q11]
Location_base_pair Starts at 55262182 and ends at 55271119 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM48   19021
Cards
Entrez_Gene (NCBI)TRIM48  79097  tripartite motif containing 48
AliasesRNF101
GeneCards (Weizmann)TRIM48
Ensembl hg19 (Hinxton)ENSG00000150244 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150244 [Gene_View]  chr11:55262182-55271119 [Contig_View]  TRIM48 [Vega]
ICGC DataPortalENSG00000150244
TCGA cBioPortalTRIM48
AceView (NCBI)TRIM48
Genatlas (Paris)TRIM48
WikiGenes79097
SOURCE (Princeton)TRIM48
Genetics Home Reference (NIH)TRIM48
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM48  -     chr11:55262182-55271119 +  11q11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM48  -     11q11   [Description]    (hg19-Feb_2009)
EnsemblTRIM48 - 11q11 [CytoView hg19]  TRIM48 - 11q11 [CytoView hg38]
Mapping of homologs : NCBITRIM48 [Mapview hg19]  TRIM48 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF521869 BC001862 EU446525 JF432259
RefSeq transcript (Entrez)NM_024114
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM48
Cluster EST : UnigeneHs.195715 [ NCBI ]
CGAP (NCI)Hs.195715
Alternative Splicing GalleryENSG00000150244
Gene ExpressionTRIM48 [ NCBI-GEO ]   TRIM48 [ EBI - ARRAY_EXPRESS ]   TRIM48 [ SEEK ]   TRIM48 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM48 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79097
GTEX Portal (Tissue expression)TRIM48
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWZ4
Splice isoforms : SwissVarQ8IWZ4
PhosPhoSitePlusQ8IWZ4
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM48
DMDM Disease mutations79097
Blocks (Seattle)TRIM48
SuperfamilyQ8IWZ4
Human Protein AtlasENSG00000150244
Peptide AtlasQ8IWZ4
HPRD15565
IPIIPI00478620   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWZ4
IntAct (EBI)Q8IWZ4
FunCoupENSG00000150244
BioGRIDTRIM48
STRING (EMBL)TRIM48
ZODIACTRIM48
Ontologies - Pathways
QuickGOQ8IWZ4
Ontology : AmiGOintracellular  zinc ion binding  
Ontology : EGO-EBIintracellular  zinc ion binding  
NDEx NetworkTRIM48
Atlas of Cancer Signalling NetworkTRIM48
Wikipedia pathwaysTRIM48
Orthology - Evolution
OrthoDB79097
GeneTree (enSembl)ENSG00000150244
Phylogenetic Trees/Animal Genes : TreeFamTRIM48
HOVERGENQ8IWZ4
HOGENOMQ8IWZ4
Homologs : HomoloGeneTRIM48
Homology/Alignments : Family Browser (UCSC)TRIM48
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM48 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM48
dbVarTRIM48
ClinVarTRIM48
1000_GenomesTRIM48 
Exome Variant ServerTRIM48
ExAC (Exome Aggregation Consortium)TRIM48 (select the gene name)
Genetic variants : HAPMAP79097
Genomic Variants (DGV)TRIM48 [DGVbeta]
DECIPHERTRIM48 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM48 
Mutations
ICGC Data PortalTRIM48 
TCGA Data PortalTRIM48 
Broad Tumor PortalTRIM48
OASIS PortalTRIM48 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM48  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM48
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM48
DgiDB (Drug Gene Interaction Database)TRIM48
DoCM (Curated mutations)TRIM48 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM48 (select a term)
intoGenTRIM48
Cancer3DTRIM48(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM48
Genetic Testing Registry TRIM48
NextProtQ8IWZ4 [Medical]
TSGene79097
GENETestsTRIM48
Target ValidationTRIM48
Huge Navigator TRIM48 [HugePedia]
snp3D : Map Gene to Disease79097
BioCentury BCIQTRIM48
ClinGenTRIM48
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79097
Chemical/Pharm GKB GenePA134981425
Clinical trialTRIM48
Miscellaneous
canSAR (ICR)TRIM48 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM48
EVEXTRIM48
GoPubMedTRIM48
iHOPTRIM48
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:32 CEST 2017

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