Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM49 (tripartite motif containing 49)

Identity

Alias_namesRNF18
ring finger protein 18
tripartite motif-containing 49
Alias_symbol (synonym)TRIM49A
Other aliasTRIM49L2
HGNC (Hugo) TRIM49
LocusID (NCBI) 57093
Atlas_Id 42132
Location 11q14.3  [Link to chromosome band 11q14]
Location_base_pair Starts at 89797655 and ends at 89808575 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM49   13431
Cards
Entrez_Gene (NCBI)TRIM49  57093  tripartite motif containing 49
AliasesRNF18; TRIM49A; TRIM49L2
GeneCards (Weizmann)TRIM49
Ensembl hg19 (Hinxton)ENSG00000168930 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168930 [Gene_View]  chr11:89797655-89808575 [Contig_View]  TRIM49 [Vega]
ICGC DataPortalENSG00000168930
TCGA cBioPortalTRIM49
AceView (NCBI)TRIM49
Genatlas (Paris)TRIM49
WikiGenes57093
SOURCE (Princeton)TRIM49
Genetics Home Reference (NIH)TRIM49
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM49  -     chr11:89797655-89808575 -  11q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM49  -     11q14.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM49 - 11q14.3 [CytoView hg19]  TRIM49 - 11q14.3 [CytoView hg38]
Mapping of homologs : NCBITRIM49 [Mapview hg19]  TRIM49 [Mapview hg38]
OMIM606124   
Gene and transcription
Genbank (Entrez)AB037682 BC075019 BC075020 BC126472 EU446828
RefSeq transcript (Entrez)NM_020358
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM49
Cluster EST : UnigeneHs.534218 [ NCBI ]
CGAP (NCI)Hs.534218
Alternative Splicing GalleryENSG00000168930
Gene ExpressionTRIM49 [ NCBI-GEO ]   TRIM49 [ EBI - ARRAY_EXPRESS ]   TRIM49 [ SEEK ]   TRIM49 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM49 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57093
GTEX Portal (Tissue expression)TRIM49
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CI25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CI25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CI25
Splice isoforms : SwissVarP0CI25
PhosPhoSitePlusP0CI25
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM49
DMDM Disease mutations57093
Blocks (Seattle)TRIM49
SuperfamilyP0CI25
Human Protein AtlasENSG00000168930
Peptide AtlasP0CI25
HPRD05840
IPIIPI00738565   
Protein Interaction databases
DIP (DOE-UCLA)P0CI25
IntAct (EBI)P0CI25
FunCoupENSG00000168930
BioGRIDTRIM49
STRING (EMBL)TRIM49
ZODIACTRIM49
Ontologies - Pathways
QuickGOP0CI25
Ontology : AmiGOprotein binding  intracellular  zinc ion binding  protein kinase binding  
Ontology : EGO-EBIprotein binding  intracellular  zinc ion binding  protein kinase binding  
NDEx NetworkTRIM49
Atlas of Cancer Signalling NetworkTRIM49
Wikipedia pathwaysTRIM49
Orthology - Evolution
OrthoDB57093
GeneTree (enSembl)ENSG00000168930
Phylogenetic Trees/Animal Genes : TreeFamTRIM49
HOVERGENP0CI25
HOGENOMP0CI25
Homologs : HomoloGeneTRIM49
Homology/Alignments : Family Browser (UCSC)TRIM49
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM49 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM49
dbVarTRIM49
ClinVarTRIM49
1000_GenomesTRIM49 
Exome Variant ServerTRIM49
ExAC (Exome Aggregation Consortium)TRIM49 (select the gene name)
Genetic variants : HAPMAP57093
Genomic Variants (DGV)TRIM49 [DGVbeta]
DECIPHERTRIM49 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM49 
Mutations
ICGC Data PortalTRIM49 
TCGA Data PortalTRIM49 
Broad Tumor PortalTRIM49
OASIS PortalTRIM49 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM49  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM49
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM49
DgiDB (Drug Gene Interaction Database)TRIM49
DoCM (Curated mutations)TRIM49 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM49 (select a term)
intoGenTRIM49
Cancer3DTRIM49(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606124   
Orphanet
MedgenTRIM49
Genetic Testing Registry TRIM49
NextProtP0CI25 [Medical]
TSGene57093
GENETestsTRIM49
Target ValidationTRIM49
Huge Navigator TRIM49 [HugePedia]
snp3D : Map Gene to Disease57093
BioCentury BCIQTRIM49
ClinGenTRIM49
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57093
Chemical/Pharm GKB GenePA34425
Clinical trialTRIM49
Miscellaneous
canSAR (ICR)TRIM49 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM49
EVEXTRIM49
GoPubMedTRIM49
iHOPTRIM49
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:36:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.