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TRIM49B (tripartite motif containing 49B)

Identity

Other alias-
HGNC (Hugo) TRIM49B
LocusID (NCBI) 283116
Atlas_Id 75162
Location 11p11.12  [Link to chromosome band 11p11]
Location_base_pair Starts at 49031600 and ends at 49037977 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM49B   42955
Cards
Entrez_Gene (NCBI)TRIM49B  283116  tripartite motif containing 49B
Aliases
GeneCards (Weizmann)TRIM49B
Ensembl hg19 (Hinxton)ENSG00000182053 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182053 [Gene_View]  chr11:49031600-49037977 [Contig_View]  TRIM49B [Vega]
ICGC DataPortalENSG00000182053
TCGA cBioPortalTRIM49B
AceView (NCBI)TRIM49B
Genatlas (Paris)TRIM49B
WikiGenes283116
SOURCE (Princeton)TRIM49B
Genetics Home Reference (NIH)TRIM49B
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM49B  -     chr11:49031600-49037977 +  11p11.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM49B  -     11p11.12   [Description]    (hg19-Feb_2009)
EnsemblTRIM49B - 11p11.12 [CytoView hg19]  TRIM49B - 11p11.12 [CytoView hg38]
Mapping of homologs : NCBITRIM49B [Mapview hg19]  TRIM49B [Mapview hg38]
Gene and transcription
Genbank (Entrez)JF968463
RefSeq transcript (Entrez)NM_001206626
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM49B
Cluster EST : UnigeneHs.448644 [ NCBI ]
CGAP (NCI)Hs.448644
Alternative Splicing GalleryENSG00000182053
Gene ExpressionTRIM49B [ NCBI-GEO ]   TRIM49B [ EBI - ARRAY_EXPRESS ]   TRIM49B [ SEEK ]   TRIM49B [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM49B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283116
GTEX Portal (Tissue expression)TRIM49B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDI0
Splice isoforms : SwissVarA6NDI0
PhosPhoSitePlusA6NDI0
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM49B
DMDM Disease mutations283116
Blocks (Seattle)TRIM49B
SuperfamilyA6NDI0
Human Protein AtlasENSG00000182053
Peptide AtlasA6NDI0
IPIIPI00220591   
Protein Interaction databases
DIP (DOE-UCLA)A6NDI0
IntAct (EBI)A6NDI0
FunCoupENSG00000182053
BioGRIDTRIM49B
STRING (EMBL)TRIM49B
ZODIACTRIM49B
Ontologies - Pathways
QuickGOA6NDI0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTRIM49B
Atlas of Cancer Signalling NetworkTRIM49B
Wikipedia pathwaysTRIM49B
Orthology - Evolution
OrthoDB283116
GeneTree (enSembl)ENSG00000182053
Phylogenetic Trees/Animal Genes : TreeFamTRIM49B
HOVERGENA6NDI0
HOGENOMA6NDI0
Homologs : HomoloGeneTRIM49B
Homology/Alignments : Family Browser (UCSC)TRIM49B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM49B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM49B
dbVarTRIM49B
ClinVarTRIM49B
1000_GenomesTRIM49B 
Exome Variant ServerTRIM49B
ExAC (Exome Aggregation Consortium)TRIM49B (select the gene name)
Genetic variants : HAPMAP283116
Genomic Variants (DGV)TRIM49B [DGVbeta]
DECIPHERTRIM49B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM49B 
Mutations
ICGC Data PortalTRIM49B 
TCGA Data PortalTRIM49B 
Broad Tumor PortalTRIM49B
OASIS PortalTRIM49B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM49B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM49B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM49B
DgiDB (Drug Gene Interaction Database)TRIM49B
DoCM (Curated mutations)TRIM49B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM49B (select a term)
intoGenTRIM49B
Cancer3DTRIM49B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM49B
Genetic Testing Registry TRIM49B
NextProtA6NDI0 [Medical]
TSGene283116
GENETestsTRIM49B
Target ValidationTRIM49B
Huge Navigator TRIM49B [HugePedia]
snp3D : Map Gene to Disease283116
BioCentury BCIQTRIM49B
ClinGenTRIM49B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283116
Chemical/Pharm GKB GenePA166049088
Clinical trialTRIM49B
Miscellaneous
canSAR (ICR)TRIM49B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM49B
EVEXTRIM49B
GoPubMedTRIM49B
iHOPTRIM49B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:32 CEST 2017

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