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TRIM49C (tripartite motif containing 49C)

Identity

Alias_namesTRIM49L2
tripartite motif containing 49-like 2
Other alias
HGNC (Hugo) TRIM49C
LocusID (NCBI) 642612
Atlas_Id 75163
Location 11q14.3  [Link to chromosome band 11q14]
Location_base_pair Starts at 90031106 and ends at 90042025 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DPF2 (11q13.1) / TRIM49C (11q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(11;11)(q13;q14) DPF2/TRIM49C

External links

Nomenclature
HGNC (Hugo)TRIM49C   38877
Cards
Entrez_Gene (NCBI)TRIM49C  642612  tripartite motif containing 49C
AliasesTRIM49L2
GeneCards (Weizmann)TRIM49C
Ensembl hg19 (Hinxton)ENSG00000204449 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204449 [Gene_View]  ENSG00000204449 [Sequence]  chr11:90031106-90042025 [Contig_View]  TRIM49C [Vega]
ICGC DataPortalENSG00000204449
TCGA cBioPortalTRIM49C
AceView (NCBI)TRIM49C
Genatlas (Paris)TRIM49C
WikiGenes642612
SOURCE (Princeton)TRIM49C
Genetics Home Reference (NIH)TRIM49C
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM49C  -     chr11:90031106-90042025 +  11q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM49C  -     11q14.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM49C - 11q14.3 [CytoView hg19]  TRIM49C - 11q14.3 [CytoView hg38]
Mapping of homologs : NCBITRIM49C [Mapview hg19]  TRIM49C [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC126470 JF968462
RefSeq transcript (Entrez)NM_001195234
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM49C
Cluster EST : UnigeneHs.740080 [ NCBI ]
CGAP (NCI)Hs.740080
Alternative Splicing GalleryENSG00000204449
Gene ExpressionTRIM49C [ NCBI-GEO ]   TRIM49C [ EBI - ARRAY_EXPRESS ]   TRIM49C [ SEEK ]   TRIM49C [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM49C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642612
GTEX Portal (Tissue expression)TRIM49C
Human Protein AtlasENSG00000204449-TRIM49C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CI26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CI26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CI26
Splice isoforms : SwissVarP0CI26
PhosPhoSitePlusP0CI26
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM49C
DMDM Disease mutations642612
Blocks (Seattle)TRIM49C
SuperfamilyP0CI26
Human Protein Atlas [tissue]ENSG00000204449-TRIM49C [tissue]
Peptide AtlasP0CI26
IPIIPI00942918   
Protein Interaction databases
DIP (DOE-UCLA)P0CI26
IntAct (EBI)P0CI26
FunCoupENSG00000204449
BioGRIDTRIM49C
STRING (EMBL)TRIM49C
ZODIACTRIM49C
Ontologies - Pathways
QuickGOP0CI26
Ontology : AmiGOintracellular  zinc ion binding  
Ontology : EGO-EBIintracellular  zinc ion binding  
NDEx NetworkTRIM49C
Atlas of Cancer Signalling NetworkTRIM49C
Wikipedia pathwaysTRIM49C
Orthology - Evolution
OrthoDB642612
GeneTree (enSembl)ENSG00000204449
Phylogenetic Trees/Animal Genes : TreeFamTRIM49C
HOVERGENP0CI26
HOGENOMP0CI26
Homologs : HomoloGeneTRIM49C
Homology/Alignments : Family Browser (UCSC)TRIM49C
Gene fusions - Rearrangements
Fusion : QuiverTRIM49C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM49C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM49C
dbVarTRIM49C
ClinVarTRIM49C
1000_GenomesTRIM49C 
Exome Variant ServerTRIM49C
ExAC (Exome Aggregation Consortium)ENSG00000204449
GNOMAD BrowserENSG00000204449
Varsome BrowserTRIM49C
Genetic variants : HAPMAP642612
Genomic Variants (DGV)TRIM49C [DGVbeta]
DECIPHERTRIM49C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM49C 
Mutations
ICGC Data PortalTRIM49C 
TCGA Data PortalTRIM49C 
Broad Tumor PortalTRIM49C
OASIS PortalTRIM49C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM49C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM49C
BioMutasearch TRIM49C
DgiDB (Drug Gene Interaction Database)TRIM49C
DoCM (Curated mutations)TRIM49C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM49C (select a term)
intoGenTRIM49C
Cancer3DTRIM49C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRIM49C
MedgenTRIM49C
Genetic Testing Registry TRIM49C
NextProtP0CI26 [Medical]
TSGene642612
GENETestsTRIM49C
Target ValidationTRIM49C
Huge Navigator TRIM49C [HugePedia]
snp3D : Map Gene to Disease642612
BioCentury BCIQTRIM49C
ClinGenTRIM49C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642612
Chemical/Pharm GKB GenePA166049036
Clinical trialTRIM49C
Miscellaneous
canSAR (ICR)TRIM49C (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM49C
EVEXTRIM49C
GoPubMedTRIM49C
iHOPTRIM49C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:36:37 CEST 2018
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