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TRIM49D1 (tripartite motif containing 49D1)

Identity

Alias_namesTRIM49DP
TRIM49D1P
tripartite motif containing 49D, pseudogene
tripartite motif containing 49D1, pseudogene
Alias_symbol (synonym)TRIM49D
Other aliasTRIM49D2
TRIM49D2P
HGNC (Hugo) TRIM49D1
LocusID (NCBI) 399939
Atlas_Id 75164
Location 11q14.3  [Link to chromosome band 11q14]
Location_base_pair Starts at 89911472 and ends at 89917710 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM49D1   43973
Cards
Entrez_Gene (NCBI)TRIM49D1  399939  tripartite motif containing 49D1
AliasesTRIM49D; TRIM49D1P; TRIM49D2; TRIM49D2P; 
TRIM49DP
GeneCards (Weizmann)TRIM49D1
Ensembl hg19 (Hinxton)ENSG00000223417 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223417 [Gene_View]  chr11:89911472-89917710 [Contig_View]  TRIM49D1 [Vega]
ICGC DataPortalENSG00000223417
TCGA cBioPortalTRIM49D1
AceView (NCBI)TRIM49D1
Genatlas (Paris)TRIM49D1
WikiGenes399939
SOURCE (Princeton)TRIM49D1
Genetics Home Reference (NIH)TRIM49D1
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM49D1  -     chr11:89911472-89917710 -  11q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM49D1  -     11q14.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM49D1 - 11q14.3 [CytoView hg19]  TRIM49D1 - 11q14.3 [CytoView hg38]
Mapping of homologs : NCBITRIM49D1 [Mapview hg19]  TRIM49D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX116917 JF968447 JF968448
RefSeq transcript (Entrez)NM_001206627
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM49D1
Cluster EST : UnigeneHs.705301 [ NCBI ]
CGAP (NCI)Hs.705301
Alternative Splicing GalleryENSG00000223417
Gene ExpressionTRIM49D1 [ NCBI-GEO ]   TRIM49D1 [ EBI - ARRAY_EXPRESS ]   TRIM49D1 [ SEEK ]   TRIM49D1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM49D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399939
GTEX Portal (Tissue expression)TRIM49D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9J1S8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9J1S8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9J1S8
Splice isoforms : SwissVarC9J1S8
PhosPhoSitePlusC9J1S8
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM49D1
DMDM Disease mutations399939
Blocks (Seattle)TRIM49D1
SuperfamilyC9J1S8
Human Protein AtlasENSG00000223417
Peptide AtlasC9J1S8
IPIIPI00556039   
Protein Interaction databases
DIP (DOE-UCLA)C9J1S8
IntAct (EBI)C9J1S8
FunCoupENSG00000223417
BioGRIDTRIM49D1
STRING (EMBL)TRIM49D1
ZODIACTRIM49D1
Ontologies - Pathways
QuickGOC9J1S8
Ontology : AmiGOintracellular  zinc ion binding  
Ontology : EGO-EBIintracellular  zinc ion binding  
NDEx NetworkTRIM49D1
Atlas of Cancer Signalling NetworkTRIM49D1
Wikipedia pathwaysTRIM49D1
Orthology - Evolution
OrthoDB399939
GeneTree (enSembl)ENSG00000223417
Phylogenetic Trees/Animal Genes : TreeFamTRIM49D1
HOVERGENC9J1S8
HOGENOMC9J1S8
Homologs : HomoloGeneTRIM49D1
Homology/Alignments : Family Browser (UCSC)TRIM49D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM49D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM49D1
dbVarTRIM49D1
ClinVarTRIM49D1
1000_GenomesTRIM49D1 
Exome Variant ServerTRIM49D1
ExAC (Exome Aggregation Consortium)TRIM49D1 (select the gene name)
Genetic variants : HAPMAP399939
Genomic Variants (DGV)TRIM49D1 [DGVbeta]
DECIPHERTRIM49D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM49D1 
Mutations
ICGC Data PortalTRIM49D1 
TCGA Data PortalTRIM49D1 
Broad Tumor PortalTRIM49D1
OASIS PortalTRIM49D1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRIM49D1
BioMutasearch TRIM49D1
DgiDB (Drug Gene Interaction Database)TRIM49D1
DoCM (Curated mutations)TRIM49D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM49D1 (select a term)
intoGenTRIM49D1
Cancer3DTRIM49D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM49D1
Genetic Testing Registry TRIM49D1
NextProtC9J1S8 [Medical]
TSGene399939
GENETestsTRIM49D1
Target ValidationTRIM49D1
Huge Navigator TRIM49D1 [HugePedia]
snp3D : Map Gene to Disease399939
BioCentury BCIQTRIM49D1
ClinGenTRIM49D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399939
Chemical/Pharm GKB GenePA166049104
Clinical trialTRIM49D1
Miscellaneous
canSAR (ICR)TRIM49D1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM49D1
EVEXTRIM49D1
GoPubMedTRIM49D1
iHOPTRIM49D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:33 CEST 2017

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