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TRIM49D2 (tripartite motif containing 49D2)

Identity

Alias_namesTRIM49L
TRIM49L1
TRIM49D2P
tripartite motif-containing 49-like
tripartite motif containing 49-like 1
tripartite motif containing 49D2, pseudogene
Other aliasTRIM48L1
TRIM49D1
HGNC (Hugo) TRIM49D2
LocusID (NCBI) 729384
Atlas_Id 76656
Location 11q14.3  [Link to chromosome band 11q14]
Location_base_pair Starts at 89911411 and ends at 89920408 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM49D2   37217
Cards
Entrez_Gene (NCBI)TRIM49D2  729384  tripartite motif containing 49D2
AliasesTRIM48L1; TRIM49D1; TRIM49D2P; TRIM49L; 
TRIM49L1
GeneCards (Weizmann)TRIM49D2
Ensembl hg19 (Hinxton)ENSG00000233802 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233802 [Gene_View]  chr11:89911411-89920408 [Contig_View]  TRIM49D2 [Vega]
ICGC DataPortalENSG00000233802
TCGA cBioPortalTRIM49D2
AceView (NCBI)TRIM49D2
Genatlas (Paris)TRIM49D2
WikiGenes729384
SOURCE (Princeton)TRIM49D2
Genetics Home Reference (NIH)TRIM49D2
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM49D2  -     chr11:89911411-89920408 -  11q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM49D2  -     11q14.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM49D2 - 11q14.3 [CytoView hg19]  TRIM49D2 - 11q14.3 [CytoView hg38]
Mapping of homologs : NCBITRIM49D2 [Mapview hg19]  TRIM49D2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)JF968447 JF968448
RefSeq transcript (Entrez)NM_001105522
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM49D2
Cluster EST : UnigeneHs.705301 [ NCBI ]
CGAP (NCI)Hs.705301
Alternative Splicing GalleryENSG00000233802
Gene ExpressionTRIM49D2 [ NCBI-GEO ]   TRIM49D2 [ EBI - ARRAY_EXPRESS ]   TRIM49D2 [ SEEK ]   TRIM49D2 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM49D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729384
GTEX Portal (Tissue expression)TRIM49D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9J1S8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9J1S8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9J1S8
Splice isoforms : SwissVarC9J1S8
PhosPhoSitePlusC9J1S8
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM49D2
DMDM Disease mutations729384
Blocks (Seattle)TRIM49D2
SuperfamilyC9J1S8
Human Protein AtlasENSG00000233802
Peptide AtlasC9J1S8
Protein Interaction databases
DIP (DOE-UCLA)C9J1S8
IntAct (EBI)C9J1S8
FunCoupENSG00000233802
BioGRIDTRIM49D2
STRING (EMBL)TRIM49D2
ZODIACTRIM49D2
Ontologies - Pathways
QuickGOC9J1S8
Ontology : AmiGOintracellular  zinc ion binding  
Ontology : EGO-EBIintracellular  zinc ion binding  
NDEx NetworkTRIM49D2
Atlas of Cancer Signalling NetworkTRIM49D2
Wikipedia pathwaysTRIM49D2
Orthology - Evolution
OrthoDB729384
GeneTree (enSembl)ENSG00000233802
Phylogenetic Trees/Animal Genes : TreeFamTRIM49D2
HOVERGENC9J1S8
HOGENOMC9J1S8
Homologs : HomoloGeneTRIM49D2
Homology/Alignments : Family Browser (UCSC)TRIM49D2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM49D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM49D2
dbVarTRIM49D2
ClinVarTRIM49D2
1000_GenomesTRIM49D2 
Exome Variant ServerTRIM49D2
ExAC (Exome Aggregation Consortium)TRIM49D2 (select the gene name)
Genetic variants : HAPMAP729384
Genomic Variants (DGV)TRIM49D2 [DGVbeta]
DECIPHERTRIM49D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM49D2 
Mutations
ICGC Data PortalTRIM49D2 
TCGA Data PortalTRIM49D2 
Broad Tumor PortalTRIM49D2
OASIS PortalTRIM49D2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRIM49D2
BioMutasearch TRIM49D2
DgiDB (Drug Gene Interaction Database)TRIM49D2
DoCM (Curated mutations)TRIM49D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM49D2 (select a term)
intoGenTRIM49D2
Cancer3DTRIM49D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM49D2
Genetic Testing Registry TRIM49D2
NextProtC9J1S8 [Medical]
TSGene729384
GENETestsTRIM49D2
Target ValidationTRIM49D2
Huge Navigator TRIM49D2 [HugePedia]
snp3D : Map Gene to Disease729384
BioCentury BCIQTRIM49D2
ClinGenTRIM49D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729384
Chemical/Pharm GKB GenePA165543723
Clinical trialTRIM49D2
Miscellaneous
canSAR (ICR)TRIM49D2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM49D2
EVEXTRIM49D2
GoPubMedTRIM49D2
iHOPTRIM49D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:07 CEST 2017

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