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TRIM50 (tripartite motif containing 50)

Identity

Alias_namesTRIM50A
tripartite motif-containing 50A
tripartite motif-containing 50
Alias_symbol (synonym)FLJ32804
Other alias
HGNC (Hugo) TRIM50
LocusID (NCBI) 135892
Atlas_Id 75166
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 72726532 and ends at 72742085 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM50   19017
Cards
Entrez_Gene (NCBI)TRIM50  135892  tripartite motif containing 50
AliasesTRIM50A
GeneCards (Weizmann)TRIM50
Ensembl hg19 (Hinxton)ENSG00000146755 [Gene_View]  chr7:72726532-72742085 [Contig_View]  TRIM50 [Vega]
Ensembl hg38 (Hinxton)ENSG00000146755 [Gene_View]  chr7:72726532-72742085 [Contig_View]  TRIM50 [Vega]
ICGC DataPortalENSG00000146755
TCGA cBioPortalTRIM50
AceView (NCBI)TRIM50
Genatlas (Paris)TRIM50
WikiGenes135892
SOURCE (Princeton)TRIM50
Genetics Home Reference (NIH)TRIM50
Genomic and cartography
GoldenPath hg19 (UCSC)TRIM50  -     chr7:72726532-72742085 -  7q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRIM50  -     7q11.23   [Description]    (hg38-Dec_2013)
EnsemblTRIM50 - 7q11.23 [CytoView hg19]  TRIM50 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBITRIM50 [Mapview hg19]  TRIM50 [Mapview hg38]
OMIM612548   
Gene and transcription
Genbank (Entrez)AI208986 AK057366 AK292074 AY081948 AY081949
RefSeq transcript (Entrez)NM_001281450 NM_001281451 NM_178125
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)TRIM50
Cluster EST : UnigeneHs.647053 [ NCBI ]
CGAP (NCI)Hs.647053
Alternative Splicing GalleryENSG00000146755
Gene ExpressionTRIM50 [ NCBI-GEO ]   TRIM50 [ EBI - ARRAY_EXPRESS ]   TRIM50 [ SEEK ]   TRIM50 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM50 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135892
GTEX Portal (Tissue expression)TRIM50
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XT4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XT4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XT4
Splice isoforms : SwissVarQ86XT4
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.-6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
PhosPhoSitePlusQ86XT4
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  
Conserved Domain (NCBI)TRIM50
DMDM Disease mutations135892
Blocks (Seattle)TRIM50
SuperfamilyQ86XT4
Human Protein AtlasENSG00000146755
Peptide AtlasQ86XT4
HPRD15566
IPIIPI00173642   IPI00477038   
Protein Interaction databases
DIP (DOE-UCLA)Q86XT4
IntAct (EBI)Q86XT4
FunCoupENSG00000146755
BioGRIDTRIM50
STRING (EMBL)TRIM50
ZODIACTRIM50
Ontologies - Pathways
QuickGOQ86XT4
Ontology : AmiGOcytoplasm  metabolic process  zinc ion binding  ligase activity  
Ontology : EGO-EBIcytoplasm  metabolic process  zinc ion binding  ligase activity  
NDEx NetworkTRIM50
Atlas of Cancer Signalling NetworkTRIM50
Wikipedia pathwaysTRIM50
Orthology - Evolution
OrthoDB135892
GeneTree (enSembl)ENSG00000146755
Phylogenetic Trees/Animal Genes : TreeFamTRIM50
HOVERGENQ86XT4
HOGENOMQ86XT4
Homologs : HomoloGeneTRIM50
Homology/Alignments : Family Browser (UCSC)TRIM50
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM50 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM50
dbVarTRIM50
ClinVarTRIM50
1000_GenomesTRIM50 
Exome Variant ServerTRIM50
ExAC (Exome Aggregation Consortium)TRIM50 (select the gene name)
Genetic variants : HAPMAP135892
Genomic Variants (DGV)TRIM50 [DGVbeta]
DECIPHER (Syndromes)7:72726532-72742085  ENSG00000146755
CONAN: Copy Number AnalysisTRIM50 
Mutations
ICGC Data PortalTRIM50 
TCGA Data PortalTRIM50 
Broad Tumor PortalTRIM50
OASIS PortalTRIM50 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM50  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM50
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM50
DgiDB (Drug Gene Interaction Database)TRIM50
DoCM (Curated mutations)TRIM50 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM50 (select a term)
intoGenTRIM50
Cancer3DTRIM50(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612548   
Orphanet
MedgenTRIM50
Genetic Testing Registry TRIM50
NextProtQ86XT4 [Medical]
TSGene135892
GENETestsTRIM50
Huge Navigator TRIM50 [HugePedia]
snp3D : Map Gene to Disease135892
BioCentury BCIQTRIM50
ClinGenTRIM50
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135892
Chemical/Pharm GKB GenePA38778
Clinical trialTRIM50
Miscellaneous
canSAR (ICR)TRIM50 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM50
EVEXTRIM50
GoPubMedTRIM50
iHOPTRIM50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:43 CET 2017

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