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TRIM51 (tripartite motif-containing 51)

Identity

Alias_namesSPRYD5
SPRY domain containing 5
Alias_symbol (synonym)TRIM51A
Other alias
HGNC (Hugo) TRIM51
LocusID (NCBI) 84767
Atlas_Id 75167
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 55883297 and ends at 55891808 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM51   19023
Cards
Entrez_Gene (NCBI)TRIM51  84767  tripartite motif-containing 51
AliasesSPRYD5; TRIM51A
GeneCards (Weizmann)TRIM51
Ensembl hg19 (Hinxton)ENSG00000124900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124900 [Gene_View]  chr11:55883297-55891808 [Contig_View]  TRIM51 [Vega]
ICGC DataPortalENSG00000124900
TCGA cBioPortalTRIM51
AceView (NCBI)TRIM51
Genatlas (Paris)TRIM51
WikiGenes84767
SOURCE (Princeton)TRIM51
Genetics Home Reference (NIH)TRIM51
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM51  -     chr11:55883297-55891808 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM51  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblTRIM51 - 11q12.1 [CytoView hg19]  TRIM51 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBITRIM51 [Mapview hg19]  TRIM51 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC005014 DV080293 DV080294 JF968454
RefSeq transcript (Entrez)NM_032681
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM51
Cluster EST : UnigeneHs.326734 [ NCBI ]
CGAP (NCI)Hs.326734
Alternative Splicing GalleryENSG00000124900
Gene ExpressionTRIM51 [ NCBI-GEO ]   TRIM51 [ EBI - ARRAY_EXPRESS ]   TRIM51 [ SEEK ]   TRIM51 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM51 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84767
GTEX Portal (Tissue expression)TRIM51
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSJ1
Splice isoforms : SwissVarQ9BSJ1
PhosPhoSitePlusQ9BSJ1
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00622   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM51
DMDM Disease mutations84767
Blocks (Seattle)TRIM51
SuperfamilyQ9BSJ1
Human Protein AtlasENSG00000124900
Peptide AtlasQ9BSJ1
HPRD10282
IPIIPI00060731   IPI00013411   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSJ1
IntAct (EBI)Q9BSJ1
FunCoupENSG00000124900
BioGRIDTRIM51
STRING (EMBL)TRIM51
ZODIACTRIM51
Ontologies - Pathways
QuickGOQ9BSJ1
Ontology : AmiGOintracellular  zinc ion binding  
Ontology : EGO-EBIintracellular  zinc ion binding  
NDEx NetworkTRIM51
Atlas of Cancer Signalling NetworkTRIM51
Wikipedia pathwaysTRIM51
Orthology - Evolution
OrthoDB84767
GeneTree (enSembl)ENSG00000124900
Phylogenetic Trees/Animal Genes : TreeFamTRIM51
HOVERGENQ9BSJ1
HOGENOMQ9BSJ1
Homologs : HomoloGeneTRIM51
Homology/Alignments : Family Browser (UCSC)TRIM51
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM51 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM51
dbVarTRIM51
ClinVarTRIM51
1000_GenomesTRIM51 
Exome Variant ServerTRIM51
ExAC (Exome Aggregation Consortium)TRIM51 (select the gene name)
Genetic variants : HAPMAP84767
Genomic Variants (DGV)TRIM51 [DGVbeta]
DECIPHERTRIM51 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM51 
Mutations
ICGC Data PortalTRIM51 
TCGA Data PortalTRIM51 
Broad Tumor PortalTRIM51
OASIS PortalTRIM51 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRIM51
BioMutasearch TRIM51
DgiDB (Drug Gene Interaction Database)TRIM51
DoCM (Curated mutations)TRIM51 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM51 (select a term)
intoGenTRIM51
Cancer3DTRIM51(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM51
Genetic Testing Registry TRIM51
NextProtQ9BSJ1 [Medical]
TSGene84767
GENETestsTRIM51
Target ValidationTRIM51
Huge Navigator TRIM51 [HugePedia]
snp3D : Map Gene to Disease84767
BioCentury BCIQTRIM51
ClinGenTRIM51
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84767
Chemical/Pharm GKB GenePA134949173
Clinical trialTRIM51
Miscellaneous
canSAR (ICR)TRIM51 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM51
EVEXTRIM51
GoPubMedTRIM51
iHOPTRIM51
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:08 CEST 2017

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