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TRIM51 (tripartite motif-containing 51)

Identity

Alias (NCBI)SPRYD5
TRIM51A
HGNC (Hugo) TRIM51
HGNC Alias symbTRIM51A
HGNC Previous nameSPRYD5
HGNC Previous nameSPRY domain containing 5
LocusID (NCBI) 84767
Atlas_Id 75167
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 55883297 and ends at 55891808 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM51   19023
Cards
Entrez_Gene (NCBI)TRIM51    tripartite motif-containing 51
AliasesSPRYD5; TRIM51A
GeneCards (Weizmann)TRIM51
Ensembl hg19 (Hinxton)ENSG00000124900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124900 [Gene_View]  ENSG00000124900 [Sequence]  chr11:55883297-55891808 [Contig_View]  TRIM51 [Vega]
ICGC DataPortalENSG00000124900
TCGA cBioPortalTRIM51
AceView (NCBI)TRIM51
Genatlas (Paris)TRIM51
SOURCE (Princeton)TRIM51
Genetics Home Reference (NIH)TRIM51
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM51  -     chr11:55883297-55891808 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM51  -     11q12.1   [Description]    (hg19-Feb_2009)
GoldenPathTRIM51 - 11q12.1 [CytoView hg19]  TRIM51 - 11q12.1 [CytoView hg38]
ImmunoBaseENSG00000124900
Genome Data Viewer NCBITRIM51 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC005014 DV080293 DV080294 JF968454
RefSeq transcript (Entrez)NM_032681
Consensus coding sequences : CCDS (NCBI)TRIM51
Gene ExpressionTRIM51 [ NCBI-GEO ]   TRIM51 [ EBI - ARRAY_EXPRESS ]   TRIM51 [ SEEK ]   TRIM51 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM51 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM51 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84767
GTEX Portal (Tissue expression)TRIM51
Human Protein AtlasENSG00000124900-TRIM51 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSJ1
PhosPhoSitePlusQ9BSJ1
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    B30.2/SPRY_sf    Butyrophylin_SPRY    ConA-like_dom_sf    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00622   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM51
SuperfamilyQ9BSJ1
AlphaFold pdb e-kbQ9BSJ1   
Human Protein Atlas [tissue]ENSG00000124900-TRIM51 [tissue]
HPRD10282
Protein Interaction databases
DIP (DOE-UCLA)Q9BSJ1
IntAct (EBI)Q9BSJ1
BioGRIDTRIM51
STRING (EMBL)TRIM51
ZODIACTRIM51
Ontologies - Pathways
QuickGOQ9BSJ1
Ontology : AmiGOcytoplasm  zinc ion binding  regulation of gene expression  protein ubiquitination  innate immune response  ubiquitin protein ligase activity  
Ontology : EGO-EBIcytoplasm  zinc ion binding  regulation of gene expression  protein ubiquitination  innate immune response  ubiquitin protein ligase activity  
NDEx NetworkTRIM51
Atlas of Cancer Signalling NetworkTRIM51
Wikipedia pathwaysTRIM51
Orthology - Evolution
OrthoDB84767
GeneTree (enSembl)ENSG00000124900
Phylogenetic Trees/Animal Genes : TreeFamTRIM51
Homologs : HomoloGeneTRIM51
Homology/Alignments : Family Browser (UCSC)TRIM51
Gene fusions - Rearrangements
Fusion : QuiverTRIM51
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM51 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM51
dbVarTRIM51
ClinVarTRIM51
MonarchTRIM51
1000_GenomesTRIM51 
Exome Variant ServerTRIM51
GNOMAD BrowserENSG00000124900
Varsome BrowserTRIM51
ACMGTRIM51 variants
VarityQ9BSJ1
Genomic Variants (DGV)TRIM51 [DGVbeta]
DECIPHERTRIM51 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM51 
Mutations
ICGC Data PortalTRIM51 
TCGA Data PortalTRIM51 
Broad Tumor PortalTRIM51
OASIS PortalTRIM51 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM51  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM51
Mutations and Diseases : HGMDTRIM51
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM51
DgiDB (Drug Gene Interaction Database)TRIM51
DoCM (Curated mutations)TRIM51
CIViC (Clinical Interpretations of Variants in Cancer)TRIM51
Cancer3DTRIM51
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRIM51
MedgenTRIM51
Genetic Testing Registry TRIM51
NextProtQ9BSJ1 [Medical]
GENETestsTRIM51
Target ValidationTRIM51
Huge Navigator TRIM51 [HugePedia]
ClinGenTRIM51
Clinical trials, drugs, therapy
MyCancerGenomeTRIM51
Protein Interactions : CTDTRIM51
Pharm GKB GenePA134949173
PharosQ9BSJ1
Clinical trialTRIM51
Miscellaneous
canSAR (ICR)TRIM51
HarmonizomeTRIM51
DataMed IndexTRIM51
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM51
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:56 CEST 2021

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