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TRIM52 (tripartite motif containing 52)

Identity

Alias (NCBI)RNF102
HGNC (Hugo) TRIM52
HGNC Alias symbRNF102
HGNC Previous nametripartite motif-containing 52
LocusID (NCBI) 84851
Atlas_Id 57730
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 181255147 and ends at 181261143 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRIM52 (5q35.3) / ME3 (11q14.2)TRIM52 (5q35.3) / RACK1 (5q35.3)TRIM52 (5q35.3) / ZNF596 (8p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM52   19024
Cards
Entrez_Gene (NCBI)TRIM52    tripartite motif containing 52
AliasesRNF102
GeneCards (Weizmann)TRIM52
Ensembl hg19 (Hinxton)ENSG00000183718 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183718 [Gene_View]  ENSG00000183718 [Sequence]  chr5:181255147-181261143 [Contig_View]  TRIM52 [Vega]
ICGC DataPortalENSG00000183718
TCGA cBioPortalTRIM52
AceView (NCBI)TRIM52
Genatlas (Paris)TRIM52
SOURCE (Princeton)TRIM52
Genetics Home Reference (NIH)TRIM52
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM52  -     chr5:181255147-181261143 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM52  -     5q35.3   [Description]    (hg19-Feb_2009)
GoldenPathTRIM52 - 5q35.3 [CytoView hg19]  TRIM52 - 5q35.3 [CytoView hg38]
ImmunoBaseENSG00000183718
Genome Data Viewer NCBITRIM52 [Mapview hg19]  
OMIM619265   
Gene and transcription
Genbank (Entrez)AA806088 AB209243 AK026706 AK054802 BC007372
RefSeq transcript (Entrez)NM_001346048 NM_001346049 NM_001346050 NM_001346051 NM_032765
Consensus coding sequences : CCDS (NCBI)TRIM52
Gene ExpressionTRIM52 [ NCBI-GEO ]   TRIM52 [ EBI - ARRAY_EXPRESS ]   TRIM52 [ SEEK ]   TRIM52 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM52 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM52 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84851
GTEX Portal (Tissue expression)TRIM52
Human Protein AtlasENSG00000183718-TRIM52 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A61
PhosPhoSitePlusQ96A61
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM52
SuperfamilyQ96A61
AlphaFold pdb e-kbQ96A61   
Human Protein Atlas [tissue]ENSG00000183718-TRIM52 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q96A61
IntAct (EBI)Q96A61
BioGRIDTRIM52
STRING (EMBL)TRIM52
ZODIACTRIM52
Ontologies - Pathways
QuickGOQ96A61
Ontology : AmiGOtranscription coactivator activity  nucleus  cytoplasm  cytoplasm  cytosol  zinc ion binding  protein ubiquitination  protein ubiquitination  nuclear body  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of transcription, DNA-templated  positive regulation of DNA-binding transcription factor activity  positive regulation of NF-kappaB transcription factor activity  defense response to virus  protein autoubiquitination  ubiquitin protein ligase activity  ubiquitin protein ligase activity  
Ontology : EGO-EBItranscription coactivator activity  nucleus  cytoplasm  cytoplasm  cytosol  zinc ion binding  protein ubiquitination  protein ubiquitination  nuclear body  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of transcription, DNA-templated  positive regulation of DNA-binding transcription factor activity  positive regulation of NF-kappaB transcription factor activity  defense response to virus  protein autoubiquitination  ubiquitin protein ligase activity  ubiquitin protein ligase activity  
NDEx NetworkTRIM52
Atlas of Cancer Signalling NetworkTRIM52
Wikipedia pathwaysTRIM52
Orthology - Evolution
OrthoDB84851
GeneTree (enSembl)ENSG00000183718
Phylogenetic Trees/Animal Genes : TreeFamTRIM52
Homologs : HomoloGeneTRIM52
Homology/Alignments : Family Browser (UCSC)TRIM52
Gene fusions - Rearrangements
Fusion : QuiverTRIM52
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM52
dbVarTRIM52
ClinVarTRIM52
MonarchTRIM52
1000_GenomesTRIM52 
Exome Variant ServerTRIM52
GNOMAD BrowserENSG00000183718
Varsome BrowserTRIM52
ACMGTRIM52 variants
VarityQ96A61
Genomic Variants (DGV)TRIM52 [DGVbeta]
DECIPHERTRIM52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM52 
Mutations
ICGC Data PortalTRIM52 
TCGA Data PortalTRIM52 
Broad Tumor PortalTRIM52
OASIS PortalTRIM52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM52  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM52
Mutations and Diseases : HGMDTRIM52
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM52
DgiDB (Drug Gene Interaction Database)TRIM52
DoCM (Curated mutations)TRIM52
CIViC (Clinical Interpretations of Variants in Cancer)TRIM52
Cancer3DTRIM52
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM619265   
Orphanet
DisGeNETTRIM52
MedgenTRIM52
Genetic Testing Registry TRIM52
NextProtQ96A61 [Medical]
GENETestsTRIM52
Target ValidationTRIM52
Huge Navigator TRIM52 [HugePedia]
ClinGenTRIM52
Clinical trials, drugs, therapy
MyCancerGenomeTRIM52
Protein Interactions : CTDTRIM52
Pharm GKB GenePA134943216
PharosQ96A61
Clinical trialTRIM52
Miscellaneous
canSAR (ICR)TRIM52
HarmonizomeTRIM52
DataMed IndexTRIM52
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:23 CEST 2021

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