Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM52 (tripartite motif containing 52)

Identity

Alias_namestripartite motif-containing 52
Alias_symbol (synonym)RNF102
Other alias
HGNC (Hugo) TRIM52
LocusID (NCBI) 84851
Atlas_Id 75169
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 181255147 and ends at 181261118 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRIM52 (5q35.3) / ME3 (11q14.2)TRIM52 (5q35.3) / RACK1 (5q35.3)TRIM52 (5q35.3) / ZNF596 (8p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM52   19024
Cards
Entrez_Gene (NCBI)TRIM52  84851  tripartite motif containing 52
AliasesRNF102
GeneCards (Weizmann)TRIM52
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:181255147-181261118 [Contig_View]  TRIM52 [Vega]
TCGA cBioPortalTRIM52
AceView (NCBI)TRIM52
Genatlas (Paris)TRIM52
WikiGenes84851
SOURCE (Princeton)TRIM52
Genetics Home Reference (NIH)TRIM52
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM52  -     chr5:181255147-181261118 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM52  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM52 - 5q35.3 [CytoView hg19]  TRIM52 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBITRIM52 [Mapview hg19]  TRIM52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA806088 AB209243 AK026706 AK054802 BC007372
RefSeq transcript (Entrez)NM_001346048 NM_001346049 NM_001346050 NM_001346051 NM_032765
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM52
Cluster EST : UnigeneHs.732588 [ NCBI ]
CGAP (NCI)Hs.732588
Gene ExpressionTRIM52 [ NCBI-GEO ]   TRIM52 [ EBI - ARRAY_EXPRESS ]   TRIM52 [ SEEK ]   TRIM52 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84851
GTEX Portal (Tissue expression)TRIM52
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A61
Splice isoforms : SwissVarQ96A61
PhosPhoSitePlusQ96A61
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM52
DMDM Disease mutations84851
Blocks (Seattle)TRIM52
SuperfamilyQ96A61
Peptide AtlasQ96A61
HPRD10283
IPIIPI00059278   IPI00555559   
Protein Interaction databases
DIP (DOE-UCLA)Q96A61
IntAct (EBI)Q96A61
BioGRIDTRIM52
STRING (EMBL)TRIM52
ZODIACTRIM52
Ontologies - Pathways
QuickGOQ96A61
Ontology : AmiGOintracellular  zinc ion binding  positive regulation of NF-kappaB transcription factor activity  
Ontology : EGO-EBIintracellular  zinc ion binding  positive regulation of NF-kappaB transcription factor activity  
NDEx NetworkTRIM52
Atlas of Cancer Signalling NetworkTRIM52
Wikipedia pathwaysTRIM52
Orthology - Evolution
OrthoDB84851
Phylogenetic Trees/Animal Genes : TreeFamTRIM52
HOVERGENQ96A61
HOGENOMQ96A61
Homologs : HomoloGeneTRIM52
Homology/Alignments : Family Browser (UCSC)TRIM52
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM52
dbVarTRIM52
ClinVarTRIM52
1000_GenomesTRIM52 
Exome Variant ServerTRIM52
ExAC (Exome Aggregation Consortium)TRIM52 (select the gene name)
Genetic variants : HAPMAP84851
Genomic Variants (DGV)TRIM52 [DGVbeta]
DECIPHERTRIM52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM52 
Mutations
ICGC Data PortalTRIM52 
TCGA Data PortalTRIM52 
Broad Tumor PortalTRIM52
OASIS PortalTRIM52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM52
DgiDB (Drug Gene Interaction Database)TRIM52
DoCM (Curated mutations)TRIM52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM52 (select a term)
intoGenTRIM52
Cancer3DTRIM52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM52
Genetic Testing Registry TRIM52
NextProtQ96A61 [Medical]
TSGene84851
GENETestsTRIM52
Target ValidationTRIM52
Huge Navigator TRIM52 [HugePedia]
snp3D : Map Gene to Disease84851
BioCentury BCIQTRIM52
ClinGenTRIM52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84851
Chemical/Pharm GKB GenePA134943216
Clinical trialTRIM52
Miscellaneous
canSAR (ICR)TRIM52 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM52
EVEXTRIM52
GoPubMedTRIM52
iHOPTRIM52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:42:33 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.