Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM53AP (tripartite motif containing 53A, pseudogene)

Identity

Alias (NCBI)TRIM53
TRIM53P
TRIM80P
HGNC (Hugo) TRIM53AP
HGNC Previous nameTRIM53
 TRIM53P
HGNC Previous nametripartite motif-containing 53
 tripartite motif containing 53
 tripartite motif containing 53, pseudogene
LocusID (NCBI) 642569
Atlas_Id 78148
Location 11q14.3  [Link to chromosome band 11q14]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM53AP   19025
Cards
Entrez_Gene (NCBI)TRIM53AP  642569  tripartite motif containing 53A, pseudogene
AliasesTRIM53; TRIM53P; TRIM80P
GeneCards (Weizmann)TRIM53AP
Ensembl hg19 (Hinxton)ENSG00000225581 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225581 [Gene_View]  ENSG00000225581 [Sequence]  - [Contig_View]  TRIM53AP [Vega]
ICGC DataPortalENSG00000225581
TCGA cBioPortalTRIM53AP
AceView (NCBI)TRIM53AP
Genatlas (Paris)TRIM53AP
WikiGenes642569
SOURCE (Princeton)TRIM53AP
Genetics Home Reference (NIH)TRIM53AP
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM53AP  -  
GoldenPath hg19 (UCSC)TRIM53AP  -  
GoldenPathTRIM53AP - [CytoView hg19]  TRIM53AP - [CytoView hg38]
ImmunoBaseENSG00000225581
genome Data Viewer NCBITRIM53AP [Mapview hg19]  
Gene and transcription
Genbank (Entrez)CA449274 JF968456 JF968457
RefSeq transcript (Entrez)NM_001145126
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM53AP
Alternative Splicing GalleryENSG00000225581
Gene ExpressionTRIM53AP [ NCBI-GEO ]   TRIM53AP [ EBI - ARRAY_EXPRESS ]   TRIM53AP [ SEEK ]   TRIM53AP [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM53AP [ Firebrowse - Broad ]
GenevisibleExpression of TRIM53AP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642569
GTEX Portal (Tissue expression)TRIM53AP
Human Protein AtlasENSG00000225581-TRIM53AP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRIM53AP
DMDM Disease mutations642569
Blocks (Seattle)TRIM53AP
Human Protein Atlas [tissue]ENSG00000225581-TRIM53AP [tissue]
Protein Interaction databases
FunCoupENSG00000225581
BioGRIDTRIM53AP
STRING (EMBL)TRIM53AP
ZODIACTRIM53AP
Ontologies - Pathways
Huge Navigator TRIM53AP [HugePedia]
snp3D : Map Gene to Disease642569
BioCentury BCIQTRIM53AP
ClinGenTRIM53AP
Clinical trials, drugs, therapy
Protein Interactions : CTD642569
Pharm GKB GenePA134935512
Clinical trialTRIM53AP
Miscellaneous
canSAR (ICR)TRIM53AP (select the gene name)
HarmonizomeTRIM53AP
DataMed IndexTRIM53AP
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM53AP
EVEXTRIM53AP
GoPubMedTRIM53AP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Aug 22 19:38:54 CEST 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.