TRIM54 (tripartite motif-containing 54)

Identity

Other names	MURF
	MURF-3
	RNF30
HGNC	TRIM54
Location	2p23.3
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	TRIM54   16008
Entrez_Gene	TRIM54  57159  tripartite motif-containing 54
	Cards
GeneCards	TRIM54
Ensembl	TRIM54 [Search_View]   ENSG00000138100 [Gene_View]
Genatlas	TRIM54
GeneLynx	TRIM54
eGenome	TRIM54
euGene	57159
	Genomic and cartography
GoldenPath	TRIM54  -  2p23.3   chr2:27359104-27383811 +  2p23.3   [Description]    (hg18-March_2006)
Ensembl	TRIM54 - 2p23.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	TRIM54
	Gene and transcription
Genbank	AJ291714 [ ENTREZ ]
Genbank	AJ291714 [ ENTREZ ]
Genbank	AK300699 [ ENTREZ ]
Genbank	BC141807 [ ENTREZ ]
Genbank	BF829678 [ ENTREZ ]
RefSeq	NM_032546 [ SRS ]    NM_032546 [ ENTREZ ]
RefSeq	NM_187841 [ SRS ]    NM_187841 [ ENTREZ ]
RefSeq	AC_000045 [ SRS ]    AC_000045 [ ENTREZ ]
RefSeq	AC_000134 [ SRS ]    AC_000134 [ ENTREZ ]
RefSeq	NC_000002 [ SRS ]    NC_000002 [ ENTREZ ]
RefSeq	NT_022184 [ SRS ]    NT_022184 [ ENTREZ ]
RefSeq	NW_001838768 [ SRS ]    NW_001838768 [ ENTREZ ]
RefSeq	NW_927719 [ SRS ]    NW_927719 [ ENTREZ ]
AceView	TRIM54 AceView - NCBI
Unigene	Hs.516036 [ SRS ]    Hs.516036 [ NCBI ]     HS516036 [ spliceNest ]
Fast-db	3150 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q9BYV2 [ SRS]    Q9BYV2 [ EXPASY ]     Q9BYV2 [ INTERPRO ]     Q9BYV2 [ UNIPROT ]
Prosite	PS51262 COS [ SRS ]    PS51262 COS [ Expasy ]
Prosite	PS50119 ZF_BBOX [ SRS ]    PS50119 ZF_BBOX [ Expasy ]
Prosite	PS00518 ZF_RING_1 [ SRS ]    PS00518 ZF_RING_1 [ Expasy ]
Prosite	PS50089 ZF_RING_2 [ SRS ]    PS50089 ZF_RING_2 [ Expasy ]
Interpro	IPR000315 Znf_B-box [ SRS ]    IPR000315 Znf_B-box [ EBI ]
Interpro	IPR001841 Znf_RING [ SRS ]    IPR001841 Znf_RING [ EBI ]
Interpro	IPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTr	Q9BYV2
Pfam	PF00643 zf-B_box [ SRS ]    PF00643 zf-B_box [ Sanger ]    pfam00643 [ NCBI-CDD ]
Pfam	PF00097 zf-C3HC4 [ SRS ]    PF00097 zf-C3HC4 [ Sanger ]    pfam00097 [ NCBI-CDD ]
Smart	SM00336 BBOX [EMBL]
Smart	SM00184 RING [EMBL]
Blocks	Q9BYV2
HPRD	05928
	Protein Interaction databases
DIP	Q9BYV2
IntAct	Q9BYV2
	Polymorphism : SNP, mutations, diseases
OMIM	606474    [ map ]
GENECLINICS	606474
SNP	TRIM54 [dbSNP-NCBI]
SNP	NM_032546 [SNP-NCI]
SNP	NM_187841 [SNP-NCI]
SNP	TRIM54 [GeneSNPs - Utah]  TRIM54] [HGBASE - SRS]
HAPMAP	TRIM54 [HAPMAP]
COSMIC	TRIM54 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	TRIM54
	General knowledge
Family Browser	TRIM54 [UCSC Family Browser]
SOURCE	NM_032546
SOURCE	NM_187841
SMD	Hs.516036
SAGE	Hs.516036
GO	signal transducer activity [Amigo]  signal transducer activity
GO	protein binding [Amigo]  protein binding
GO	intracellular [Amigo]  intracellular
GO	cytoplasm [Amigo]  cytoplasm
GO	cytoskeleton [Amigo]  cytoskeleton
GO	microtubule [Amigo]  microtubule
GO	microtubule-based process [Amigo]  microtubule-based process
GO	negative regulation of microtubule depolymerization [Amigo]  negative regulation of microtubule depolymerization
GO	signal transduction [Amigo]  signal transduction
GO	multicellular organismal development [Amigo]  multicellular organismal development
GO	zinc ion binding [Amigo]  zinc ion binding
GO	cell differentiation [Amigo]  cell differentiation
GO	metal ion binding [Amigo]  metal ion binding
PubGene	TRIM54
TreeFam	TRIM54
CTD	57159 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	TRIM54 Related clones (RZPD - Berlin)
	PubMed
PubMed	4 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:36:27 2008