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TRIM55 (tripartite motif containing 55)

Identity

Alias_namesRNF29
ring finger protein 29
tripartite motif-containing 55
Alias_symbol (synonym)MURF-2
Other aliasmuRF2
HGNC (Hugo) TRIM55
LocusID (NCBI) 84675
Atlas_Id 42135
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 67039278 and ends at 67087718 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PDE7A (8q13.1) / TRIM55 (8q13.1)PSMG3 (7p22.3) / TRIM55 (8q13.1)SGK3 (8q13.1) / TRIM55 (8q13.1)
TRIM55 (8q13.1) / PSMG3 (7p22.3)PDE7A 8q13.1 / TRIM55 8q13.1SGK3 8q13.1 / TRIM55 8q13.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM55   14215
Cards
Entrez_Gene (NCBI)TRIM55  84675  tripartite motif containing 55
AliasesMURF-2; RNF29; muRF2
GeneCards (Weizmann)TRIM55
Ensembl hg19 (Hinxton)ENSG00000147573 [Gene_View]  chr8:67039278-67087718 [Contig_View]  TRIM55 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147573 [Gene_View]  chr8:67039278-67087718 [Contig_View]  TRIM55 [Vega]
ICGC DataPortalENSG00000147573
TCGA cBioPortalTRIM55
AceView (NCBI)TRIM55
Genatlas (Paris)TRIM55
WikiGenes84675
SOURCE (Princeton)TRIM55
Genetics Home Reference (NIH)TRIM55
Genomic and cartography
GoldenPath hg19 (UCSC)TRIM55  -     chr8:67039278-67087718 +  8q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRIM55  -     8q13.1   [Description]    (hg38-Dec_2013)
EnsemblTRIM55 - 8q13.1 [CytoView hg19]  TRIM55 - 8q13.1 [CytoView hg38]
Mapping of homologs : NCBITRIM55 [Mapview hg19]  TRIM55 [Mapview hg38]
OMIM606469   
Gene and transcription
Genbank (Entrez)AJ243488 AJ243489 AJ277493 AJ291712 AJ291712
RefSeq transcript (Entrez)NM_033058 NM_184085 NM_184086 NM_184087
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)TRIM55
Cluster EST : UnigeneHs.85524 [ NCBI ]
CGAP (NCI)Hs.85524
Alternative Splicing GalleryENSG00000147573
Gene ExpressionTRIM55 [ NCBI-GEO ]   TRIM55 [ EBI - ARRAY_EXPRESS ]   TRIM55 [ SEEK ]   TRIM55 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM55 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84675
GTEX Portal (Tissue expression)TRIM55
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYV6
Splice isoforms : SwissVarQ9BYV6
PhosPhoSitePlusQ9BYV6
Domaine pattern : Prosite (Expaxy)COS (PS51262)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)COS_domain    Znf-RING_LisH    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam00643    pfam13445   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM55
DMDM Disease mutations84675
Blocks (Seattle)TRIM55
SuperfamilyQ9BYV6
Human Protein AtlasENSG00000147573
Peptide AtlasQ9BYV6
HPRD05927
IPIIPI00375443   IPI00375444   IPI00011473   IPI00216729   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYV6
IntAct (EBI)Q9BYV6
FunCoupENSG00000147573
BioGRIDTRIM55
STRING (EMBL)TRIM55
ZODIACTRIM55
Ontologies - Pathways
QuickGOQ9BYV6
Ontology : AmiGOsignal transducer activity  protein binding  nucleus  cytoplasm  microtubule  signal transduction  zinc ion binding  identical protein binding  
Ontology : EGO-EBIsignal transducer activity  protein binding  nucleus  cytoplasm  microtubule  signal transduction  zinc ion binding  identical protein binding  
NDEx NetworkTRIM55
Atlas of Cancer Signalling NetworkTRIM55
Wikipedia pathwaysTRIM55
Orthology - Evolution
OrthoDB84675
GeneTree (enSembl)ENSG00000147573
Phylogenetic Trees/Animal Genes : TreeFamTRIM55
HOVERGENQ9BYV6
HOGENOMQ9BYV6
Homologs : HomoloGeneTRIM55
Homology/Alignments : Family Browser (UCSC)TRIM55
Gene fusions - Rearrangements
Fusion : MitelmanPDE7A/TRIM55 [8q13.1/8q13.1]  [t(8;8)(q13;q13)]  
Fusion : MitelmanSGK3/TRIM55 [8q13.1/8q13.1]  [t(8;8)(q13;q13)]  
Fusion: TCGAPDE7A 8q13.1 TRIM55 8q13.1 BRCA
Fusion: TCGASGK3 8q13.1 TRIM55 8q13.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM55
dbVarTRIM55
ClinVarTRIM55
1000_GenomesTRIM55 
Exome Variant ServerTRIM55
ExAC (Exome Aggregation Consortium)TRIM55 (select the gene name)
Genetic variants : HAPMAP84675
Genomic Variants (DGV)TRIM55 [DGVbeta]
DECIPHER (Syndromes)8:67039278-67087718  ENSG00000147573
CONAN: Copy Number AnalysisTRIM55 
Mutations
ICGC Data PortalTRIM55 
TCGA Data PortalTRIM55 
Broad Tumor PortalTRIM55
OASIS PortalTRIM55 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM55  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM55
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM55
DgiDB (Drug Gene Interaction Database)TRIM55
DoCM (Curated mutations)TRIM55 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM55 (select a term)
intoGenTRIM55
Cancer3DTRIM55(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606469   
Orphanet
MedgenTRIM55
Genetic Testing Registry TRIM55
NextProtQ9BYV6 [Medical]
TSGene84675
GENETestsTRIM55
Huge Navigator TRIM55 [HugePedia]
snp3D : Map Gene to Disease84675
BioCentury BCIQTRIM55
ClinGenTRIM55
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84675
Chemical/Pharm GKB GenePA34432
Clinical trialTRIM55
Miscellaneous
canSAR (ICR)TRIM55 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM55
EVEXTRIM55
GoPubMedTRIM55
iHOPTRIM55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:29 CEST 2017

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