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TRIM56 (tripartite motif containing 56)

Identity

Alias_namestripartite motif-containing 56
Alias_symbol (synonym)RNF109
Other alias
HGNC (Hugo) TRIM56
LocusID (NCBI) 81844
Atlas_Id 75171
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 101085439 and ends at 101091738 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRIM56 (7q22.1) / MAVS (20p13)TRIM56 (7q22.1) / SNRNP70 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM56   19028
Cards
Entrez_Gene (NCBI)TRIM56  81844  tripartite motif containing 56
AliasesRNF109
GeneCards (Weizmann)TRIM56
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:101085439-101091738 [Contig_View]  TRIM56 [Vega]
TCGA cBioPortalTRIM56
AceView (NCBI)TRIM56
Genatlas (Paris)TRIM56
WikiGenes81844
SOURCE (Princeton)TRIM56
Genetics Home Reference (NIH)TRIM56
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM56  -     chr7:101085439-101091738 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM56  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblTRIM56 - 7q22.1 [CytoView hg19]  TRIM56 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBITRIM56 [Mapview hg19]  TRIM56 [Mapview hg38]
OMIM616996   
Gene and transcription
Genbank (Entrez)AK075255 AL162075 AL512757 BC005847 BC011882
RefSeq transcript (Entrez)NM_030961
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM56
Cluster EST : UnigeneHs.593351 [ NCBI ]
CGAP (NCI)Hs.593351
Gene ExpressionTRIM56 [ NCBI-GEO ]   TRIM56 [ EBI - ARRAY_EXPRESS ]   TRIM56 [ SEEK ]   TRIM56 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81844
GTEX Portal (Tissue expression)TRIM56
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRZ2
Splice isoforms : SwissVarQ9BRZ2
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ9BRZ2
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    Znf-RING_LisH    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam00643    pfam13445   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM56
DMDM Disease mutations81844
Blocks (Seattle)TRIM56
SuperfamilyQ9BRZ2
Peptide AtlasQ9BRZ2
HPRD10284
IPIIPI00514832   IPI00872056   IPI00871506   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRZ2
IntAct (EBI)Q9BRZ2
BioGRIDTRIM56
STRING (EMBL)TRIM56
ZODIACTRIM56
Ontologies - Pathways
QuickGOQ9BRZ2
Ontology : AmiGORNA binding  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  cytoplasm  cytosol  zinc ion binding  regulation of type I interferon production  interferon-beta production  response to type I interferon  defense response to virus  protein K63-linked ubiquitination  
Ontology : EGO-EBIRNA binding  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  cytoplasm  cytosol  zinc ion binding  regulation of type I interferon production  interferon-beta production  response to type I interferon  uŽ/ego/DisplayGoTerm?id=GO:0051607 TARGET=EGO>defense response to virus  protein K63-linked ubiquitination  
NDEx NetworkTRIM56
Atlas of Cancer Signalling NetworkTRIM56
Wikipedia pathwaysTRIM56
Orthology - Evolution
OrthoDB81844
Phylogenetic Trees/Animal Genes : TreeFamTRIM56
HOVERGENQ9BRZ2
HOGENOMQ9BRZ2
Homologs : HomoloGeneTRIM56
Homology/Alignments : Family Browser (UCSC)TRIM56
Gene fusions - Rearrangements
Tumor Fusion PortalTRIM56
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM56
dbVarTRIM56
ClinVarTRIM56
1000_GenomesTRIM56 
Exome Variant ServerTRIM56
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP81844
Genomic Variants (DGV)TRIM56 [DGVbeta]
DECIPHERTRIM56 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM56 
Mutations
ICGC Data PortalTRIM56 
TCGA Data PortalTRIM56 
Broad Tumor PortalTRIM56
OASIS PortalTRIM56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM56  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM56
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM56
DgiDB (Drug Gene Interaction Database)TRIM56
DoCM (Curated mutations)TRIM56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM56 (select a term)
intoGenTRIM56
Cancer3DTRIM56(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616996   
Orphanet
DisGeNETTRIM56
MedgenTRIM56
Genetic Testing Registry TRIM56
NextProtQ9BRZ2 [Medical]
TSGene81844
GENETestsTRIM56
Target ValidationTRIM56
Huge Navigator TRIM56 [HugePedia]
snp3D : Map Gene to Disease81844
BioCentury BCIQTRIM56
ClinGenTRIM56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81844
Chemical/Pharm GKB GenePA134958549
Clinical trialTRIM56
Miscellaneous
canSAR (ICR)TRIM56 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM56
EVEXTRIM56
GoPubMedTRIM56
iHOPTRIM56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:17:35 CET 2017

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