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TRIM56 (tripartite motif containing 56)

Identity

Alias (NCBI)RNF109
HGNC (Hugo) TRIM56
HGNC Alias symbRNF109
HGNC Previous nametripartite motif-containing 56
LocusID (NCBI) 81844
Atlas_Id 57264
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 101085481 and ends at 101097967 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRIM56 (7q22.1) / MAVS (20p13)TRIM56 (7q22.1) / SNRNP70 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM56   19028
Cards
Entrez_Gene (NCBI)TRIM56    tripartite motif containing 56
AliasesRNF109
GeneCards (Weizmann)TRIM56
Ensembl hg19 (Hinxton)ENSG00000169871 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169871 [Gene_View]  ENSG00000169871 [Sequence]  chr7:101085481-101097967 [Contig_View]  TRIM56 [Vega]
ICGC DataPortalENSG00000169871
TCGA cBioPortalTRIM56
AceView (NCBI)TRIM56
Genatlas (Paris)TRIM56
SOURCE (Princeton)TRIM56
Genetics Home Reference (NIH)TRIM56
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM56  -     chr7:101085481-101097967 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM56  -     7q22.1   [Description]    (hg19-Feb_2009)
GoldenPathTRIM56 - 7q22.1 [CytoView hg19]  TRIM56 - 7q22.1 [CytoView hg38]
ImmunoBaseENSG00000169871
Genome Data Viewer NCBITRIM56 [Mapview hg19]  
OMIM616996   
Gene and transcription
Genbank (Entrez)AK075255 AL162075 AL512757 BC005847 BC011882
RefSeq transcript (Entrez)NM_030961
Consensus coding sequences : CCDS (NCBI)TRIM56
Gene ExpressionTRIM56 [ NCBI-GEO ]   TRIM56 [ EBI - ARRAY_EXPRESS ]   TRIM56 [ SEEK ]   TRIM56 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM56 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM56 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81844
GTEX Portal (Tissue expression)TRIM56
Human Protein AtlasENSG00000169871-TRIM56 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRZ2
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ9BRZ2
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    Znf-RING_LisH    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam00643    pfam13445   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM56
PDB (RSDB)5JW7   
PDB Europe5JW7   
PDB (PDBSum)5JW7   
PDB (IMB)5JW7   
Structural Biology KnowledgeBase5JW7   
SCOP (Structural Classification of Proteins)5JW7   
CATH (Classification of proteins structures)5JW7   
SuperfamilyQ9BRZ2
AlphaFold pdb e-kbQ9BRZ2   
Human Protein Atlas [tissue]ENSG00000169871-TRIM56 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9BRZ2
IntAct (EBI)Q9BRZ2
BioGRIDTRIM56
STRING (EMBL)TRIM56
ZODIACTRIM56
Ontologies - Pathways
QuickGOQ9BRZ2
Ontology : AmiGOchromatin  RNA binding  ubiquitin-protein transferase activity  protein binding  nucleoplasm  cytoplasm  cytosol  zinc ion binding  regulation of type I interferon production  positive regulation of interferon-beta production  response to type I interferon  innate immune response  positive regulation of transcription, DNA-templated  defense response to virus  ubiquitin protein ligase activity  protein K63-linked ubiquitination  
Ontology : EGO-EBIchromatin  RNA binding  ubiquitin-protein transferase activity  protein binding  nucleoplasm  cytoplasm  cytosol  zinc ion binding  regulation of type I interferon production  positive regulation of interferon-beta production  response to type I interferon  innate immune response  positive regulation of transcription, DNA-templated  defense response to virus  ubiquitin protein ligase activity  protein K63-linked ubiquitination  
NDEx NetworkTRIM56
Atlas of Cancer Signalling NetworkTRIM56
Wikipedia pathwaysTRIM56
Orthology - Evolution
OrthoDB81844
GeneTree (enSembl)ENSG00000169871
Phylogenetic Trees/Animal Genes : TreeFamTRIM56
Homologs : HomoloGeneTRIM56
Homology/Alignments : Family Browser (UCSC)TRIM56
Gene fusions - Rearrangements
Fusion : QuiverTRIM56
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM56
dbVarTRIM56
ClinVarTRIM56
MonarchTRIM56
1000_GenomesTRIM56 
Exome Variant ServerTRIM56
GNOMAD BrowserENSG00000169871
Varsome BrowserTRIM56
ACMGTRIM56 variants
VarityQ9BRZ2
Genomic Variants (DGV)TRIM56 [DGVbeta]
DECIPHERTRIM56 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM56 
Mutations
ICGC Data PortalTRIM56 
TCGA Data PortalTRIM56 
Broad Tumor PortalTRIM56
OASIS PortalTRIM56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM56  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM56
Mutations and Diseases : HGMDTRIM56
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM56
DgiDB (Drug Gene Interaction Database)TRIM56
DoCM (Curated mutations)TRIM56
CIViC (Clinical Interpretations of Variants in Cancer)TRIM56
Cancer3DTRIM56
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616996   
Orphanet
DisGeNETTRIM56
MedgenTRIM56
Genetic Testing Registry TRIM56
NextProtQ9BRZ2 [Medical]
GENETestsTRIM56
Target ValidationTRIM56
Huge Navigator TRIM56 [HugePedia]
ClinGenTRIM56
Clinical trials, drugs, therapy
MyCancerGenomeTRIM56
Protein Interactions : CTDTRIM56
Pharm GKB GenePA134958549
PharosQ9BRZ2
Clinical trialTRIM56
Miscellaneous
canSAR (ICR)TRIM56
HarmonizomeTRIM56
DataMed IndexTRIM56
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:23 CEST 2021

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