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TRIM58 (tripartite motif containing 58)

Identity

Alias_namestripartite motif-containing 58
Alias_symbol (synonym)BIA2
Other alias
HGNC (Hugo) TRIM58
LocusID (NCBI) 25893
Atlas_Id 790
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 247857199 and ends at 247880136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LGR4 (11p14.1) / TRIM58 (1q44)RALA (7p14.1) / TRIM58 (1q44)TRIM58 (1q44) / OR2T8 (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM58   24150
Cards
Entrez_Gene (NCBI)TRIM58  25893  tripartite motif containing 58
AliasesBIA2
GeneCards (Weizmann)TRIM58
Ensembl hg19 (Hinxton)ENSG00000162722 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162722 [Gene_View]  chr1:247857199-247880136 [Contig_View]  TRIM58 [Vega]
ICGC DataPortalENSG00000162722
TCGA cBioPortalTRIM58
AceView (NCBI)TRIM58
Genatlas (Paris)TRIM58
WikiGenes25893
SOURCE (Princeton)TRIM58
Genetics Home Reference (NIH)TRIM58
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM58  -     chr1:247857199-247880136 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM58  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblTRIM58 - 1q44 [CytoView hg19]  TRIM58 - 1q44 [CytoView hg38]
Mapping of homologs : NCBITRIM58 [Mapview hg19]  TRIM58 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF327057 AK096188 BC074748 BX537432 BX644877
RefSeq transcript (Entrez)NM_015431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM58
Cluster EST : UnigeneHs.269151 [ NCBI ]
CGAP (NCI)Hs.269151
Alternative Splicing GalleryENSG00000162722
Gene ExpressionTRIM58 [ NCBI-GEO ]   TRIM58 [ EBI - ARRAY_EXPRESS ]   TRIM58 [ SEEK ]   TRIM58 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25893
GTEX Portal (Tissue expression)TRIM58
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NG06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NG06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NG06
Splice isoforms : SwissVarQ8NG06
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ8NG06
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM58
DMDM Disease mutations25893
Blocks (Seattle)TRIM58
SuperfamilyQ8NG06
Human Protein AtlasENSG00000162722
Peptide AtlasQ8NG06
HPRD09825
IPIIPI00464988   
Protein Interaction databases
DIP (DOE-UCLA)Q8NG06
IntAct (EBI)Q8NG06
FunCoupENSG00000162722
BioGRIDTRIM58
STRING (EMBL)TRIM58
ZODIACTRIM58
Ontologies - Pathways
QuickGOQ8NG06
Ontology : AmiGOintracellular  zinc ion binding  protein ubiquitination  transferase activity  
Ontology : EGO-EBIintracellular  zinc ion binding  protein ubiquitination  transferase activity  
NDEx NetworkTRIM58
Atlas of Cancer Signalling NetworkTRIM58
Wikipedia pathwaysTRIM58
Orthology - Evolution
OrthoDB25893
GeneTree (enSembl)ENSG00000162722
Phylogenetic Trees/Animal Genes : TreeFamTRIM58
HOVERGENQ8NG06
HOGENOMQ8NG06
Homologs : HomoloGeneTRIM58
Homology/Alignments : Family Browser (UCSC)TRIM58
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM58
dbVarTRIM58
ClinVarTRIM58
1000_GenomesTRIM58 
Exome Variant ServerTRIM58
ExAC (Exome Aggregation Consortium)TRIM58 (select the gene name)
Genetic variants : HAPMAP25893
Genomic Variants (DGV)TRIM58 [DGVbeta]
DECIPHERTRIM58 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM58 
Mutations
ICGC Data PortalTRIM58 
TCGA Data PortalTRIM58 
Broad Tumor PortalTRIM58
OASIS PortalTRIM58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM58  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM58
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM58
DgiDB (Drug Gene Interaction Database)TRIM58
DoCM (Curated mutations)TRIM58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM58 (select a term)
intoGenTRIM58
Cancer3DTRIM58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM58
Genetic Testing Registry TRIM58
NextProtQ8NG06 [Medical]
TSGene25893
GENETestsTRIM58
Target ValidationTRIM58
Huge Navigator TRIM58 [HugePedia]
snp3D : Map Gene to Disease25893
BioCentury BCIQTRIM58
ClinGenTRIM58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25893
Chemical/Pharm GKB GenePA134942549
Clinical trialTRIM58
Miscellaneous
canSAR (ICR)TRIM58 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM58
EVEXTRIM58
GoPubMedTRIM58
iHOPTRIM58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:10:31 CEST 2017

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