Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TRIM6-TRIM34 (TRIM6-TRIM34 readthrough)

Identity

Other aliasIFP1
RNF21
TRIM34
HGNC (Hugo) TRIM6-TRIM34
LocusID (NCBI) 445372
Atlas_Id 75181
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5596635 and ends at 5644395 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM6-TRIM34   33440
Cards
Entrez_Gene (NCBI)TRIM6-TRIM34  445372  TRIM6-TRIM34 readthrough
AliasesIFP1; RNF21; TRIM34
GeneCards (Weizmann)TRIM6-TRIM34
Ensembl hg19 (Hinxton)ENSG00000258588 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258588 [Gene_View]  chr11:5596635-5644395 [Contig_View]  TRIM6-TRIM34 [Vega]
ICGC DataPortalENSG00000258588
TCGA cBioPortalTRIM6-TRIM34
AceView (NCBI)TRIM6-TRIM34
Genatlas (Paris)TRIM6-TRIM34
WikiGenes445372
SOURCE (Princeton)TRIM6-TRIM34
Genetics Home Reference (NIH)TRIM6-TRIM34
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM6-TRIM34  -     chr11:5596635-5644395 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM6-TRIM34  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblTRIM6-TRIM34 - 11p15.4 [CytoView hg19]  TRIM6-TRIM34 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBITRIM6-TRIM34 [Mapview hg19]  TRIM6-TRIM34 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB039903 AW516211 BC136871 BC140722 BC144424
RefSeq transcript (Entrez)NM_001003819
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM6-TRIM34
Cluster EST : UnigeneHs.729048 [ NCBI ]
CGAP (NCI)Hs.729048
Alternative Splicing GalleryENSG00000258588
Gene ExpressionTRIM6-TRIM34 [ NCBI-GEO ]   TRIM6-TRIM34 [ EBI - ARRAY_EXPRESS ]   TRIM6-TRIM34 [ SEEK ]   TRIM6-TRIM34 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM6-TRIM34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)445372
GTEX Portal (Tissue expression)TRIM6-TRIM34
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRIM6-TRIM34
DMDM Disease mutations445372
Blocks (Seattle)TRIM6-TRIM34
Human Protein AtlasENSG00000258588
HPRD18660
IPIIPI00854740   
Protein Interaction databases
FunCoupENSG00000258588
BioGRIDTRIM6-TRIM34
STRING (EMBL)TRIM6-TRIM34
ZODIACTRIM6-TRIM34
Ontologies - Pathways
Huge Navigator TRIM6-TRIM34 [HugePedia]
snp3D : Map Gene to Disease445372
BioCentury BCIQTRIM6-TRIM34
ClinGenTRIM6-TRIM34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD445372
Chemical/Pharm GKB GenePA162406977
Clinical trialTRIM6-TRIM34
Miscellaneous
canSAR (ICR)TRIM6-TRIM34 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM6-TRIM34
EVEXTRIM6-TRIM34
GoPubMedTRIM6-TRIM34
iHOPTRIM6-TRIM34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:36 CEST 2017

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