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TRIM6 (tripartite motif containing 6)

Identity

Alias_namestripartite motif-containing 6
Alias_symbol (synonym)RNF89
Other alias
HGNC (Hugo) TRIM6
LocusID (NCBI) 117854
Atlas_Id 75172
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5596635 and ends at 5612958 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRIM6 (11p15.4) / TRIM34 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM6   16277
Cards
Entrez_Gene (NCBI)TRIM6  117854  tripartite motif containing 6
AliasesRNF89
GeneCards (Weizmann)TRIM6
Ensembl hg19 (Hinxton)ENSG00000121236 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121236 [Gene_View]  chr11:5596635-5612958 [Contig_View]  TRIM6 [Vega]
ICGC DataPortalENSG00000121236
TCGA cBioPortalTRIM6
AceView (NCBI)TRIM6
Genatlas (Paris)TRIM6
WikiGenes117854
SOURCE (Princeton)TRIM6
Genetics Home Reference (NIH)TRIM6
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM6  -     chr11:5596635-5612958 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM6  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblTRIM6 - 11p15.4 [CytoView hg19]  TRIM6 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBITRIM6 [Mapview hg19]  TRIM6 [Mapview hg38]
OMIM607564   
Gene and transcription
Genbank (Entrez)AF220030 AK023210 AK027664 AK290172 AK293295
RefSeq transcript (Entrez)NM_001003818 NM_001198644 NM_001198645 NM_058166
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM6
Cluster EST : UnigeneHs.729048 [ NCBI ]
CGAP (NCI)Hs.729048
Alternative Splicing GalleryENSG00000121236
Gene ExpressionTRIM6 [ NCBI-GEO ]   TRIM6 [ EBI - ARRAY_EXPRESS ]   TRIM6 [ SEEK ]   TRIM6 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)117854
GTEX Portal (Tissue expression)TRIM6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C030   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C030  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C030
Splice isoforms : SwissVarQ9C030
PhosPhoSitePlusQ9C030
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf-RING_LisH    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam00622    pfam00643    pfam13445   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM6
DMDM Disease mutations117854
Blocks (Seattle)TRIM6
SuperfamilyQ9C030
Human Protein AtlasENSG00000121236
Peptide AtlasQ9C030
HPRD12123
IPIIPI00552150   IPI00940053   IPI00645263   IPI00470944   IPI00926371   IPI01012848   
Protein Interaction databases
DIP (DOE-UCLA)Q9C030
IntAct (EBI)Q9C030
FunCoupENSG00000121236
BioGRIDTRIM6
STRING (EMBL)TRIM6
ZODIACTRIM6
Ontologies - Pathways
QuickGOQ9C030
Ontology : AmiGOprotein polyubiquitination  positive regulation of defense response to virus by host  positive regulation of cytokine secretion involved in immune response  molecular_function  protein binding  nucleus  cytoplasm  cytosol  transcription factor binding  zinc ion binding  positive regulation of gene expression  negative regulation of gene expression  positive regulation of peptidyl-threonine phosphorylation  free ubiquitin chain polymerization  protein kinase binding  protein binding, bridging  response to lipopolysaccharide  positive regulation of peptidyl-serine phosphorylation  cellular response to interferon-beta  negative regulation of viral genome replication  negative regulation of transcription, DNA-templated  positive regulation of type I interferon-mediated signaling pathway  ubiquitin protein ligase activity  protein trimerization  cellular response to virus  regulation of NIK/NF-kappaB signaling  protein tyrosine kinase binding  positive regulation of transcription regulatory region DNA binding  negative regulation of stem cell differentiation  
Ontology : EGO-EBIprotein polyubiquitination  positive regulation of defense response to virus by host  positive regulation of cytokine secretion involved in immune response  molecular_function  protein binding  nucleus  cytoplasm  cytosol  transcription factor binding  zinc ion binding  positive regulation of gene expression  negative regulation of gene expression  positive regulation of peptidyl-threonine phosphorylation  free ubiquitin chain polymerization  protein kinase binding  protein binding, bridging  response to lipopolysaccharide  positive regulation of peptidyl-serine phosphorylation  cellular response to interferon-beta  negative regulation of viral genome replication  negative regulation of transcription, DNA-templated  positive regulation of type I interferon-mediated signaling pathway  ubiquitin protein ligase activity  protein trimerization  cellular response to virus  regulation of NIK/NF-kappaB signaling  protein tyrosine kinase binding  positive regulation of transcription regulatory region DNA binding  negative regulation of stem cell differentiation  
NDEx NetworkTRIM6
Atlas of Cancer Signalling NetworkTRIM6
Wikipedia pathwaysTRIM6
Orthology - Evolution
OrthoDB117854
GeneTree (enSembl)ENSG00000121236
Phylogenetic Trees/Animal Genes : TreeFamTRIM6
HOVERGENQ9C030
HOGENOMQ9C030
Homologs : HomoloGeneTRIM6
Homology/Alignments : Family Browser (UCSC)TRIM6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM6
dbVarTRIM6
ClinVarTRIM6
1000_GenomesTRIM6 
Exome Variant ServerTRIM6
ExAC (Exome Aggregation Consortium)TRIM6 (select the gene name)
Genetic variants : HAPMAP117854
Genomic Variants (DGV)TRIM6 [DGVbeta]
DECIPHERTRIM6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM6 
Mutations
ICGC Data PortalTRIM6 
TCGA Data PortalTRIM6 
Broad Tumor PortalTRIM6
OASIS PortalTRIM6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM6
DgiDB (Drug Gene Interaction Database)TRIM6
DoCM (Curated mutations)TRIM6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM6 (select a term)
intoGenTRIM6
Cancer3DTRIM6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607564   
Orphanet
MedgenTRIM6
Genetic Testing Registry TRIM6
NextProtQ9C030 [Medical]
TSGene117854
GENETestsTRIM6
Target ValidationTRIM6
Huge Navigator TRIM6 [HugePedia]
snp3D : Map Gene to Disease117854
BioCentury BCIQTRIM6
ClinGenTRIM6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD117854
Chemical/Pharm GKB GenePA38110
Clinical trialTRIM6
Miscellaneous
canSAR (ICR)TRIM6 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM6
EVEXTRIM6
GoPubMedTRIM6
iHOPTRIM6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:34 CEST 2017

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