Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM60 (tripartite motif containing 60)

Identity

Alias_namesRNF129
RNF33
ring finger protein 129
tripartite motif-containing 60
Alias_symbol (synonym)FLJ35882
Other alias
HGNC (Hugo) TRIM60
LocusID (NCBI) 166655
Atlas_Id 46678
Location 4q32.3  [Link to chromosome band 4q32]
Location_base_pair Starts at 165031999 and ends at 165041744 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ITFG1 (16q12.1) / TRIM60 (4q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM60   21162
Cards
Entrez_Gene (NCBI)TRIM60  166655  tripartite motif containing 60
AliasesRNF129; RNF33
GeneCards (Weizmann)TRIM60
Ensembl hg19 (Hinxton)ENSG00000176979 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176979 [Gene_View]  chr4:165031999-165041744 [Contig_View]  TRIM60 [Vega]
ICGC DataPortalENSG00000176979
TCGA cBioPortalTRIM60
AceView (NCBI)TRIM60
Genatlas (Paris)TRIM60
WikiGenes166655
SOURCE (Princeton)TRIM60
Genetics Home Reference (NIH)TRIM60
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM60  -     chr4:165031999-165041744 +  4q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM60  -     4q32.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM60 - 4q32.3 [CytoView hg19]  TRIM60 - 4q32.3 [CytoView hg38]
Mapping of homologs : NCBITRIM60 [Mapview hg19]  TRIM60 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093201 BC100983 BC100984 BC100985 BC100986
RefSeq transcript (Entrez)NM_001258025 NM_152620
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM60
Cluster EST : UnigeneHs.368004 [ NCBI ]
CGAP (NCI)Hs.368004
Alternative Splicing GalleryENSG00000176979
Gene ExpressionTRIM60 [ NCBI-GEO ]   TRIM60 [ EBI - ARRAY_EXPRESS ]   TRIM60 [ SEEK ]   TRIM60 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM60 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)166655
GTEX Portal (Tissue expression)TRIM60
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ495X7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ495X7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ495X7
Splice isoforms : SwissVarQ495X7
PhosPhoSitePlusQ495X7
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM60
DMDM Disease mutations166655
Blocks (Seattle)TRIM60
SuperfamilyQ495X7
Human Protein AtlasENSG00000176979
Peptide AtlasQ495X7
HPRD11502
IPIIPI00167899   IPI00967237   
Protein Interaction databases
DIP (DOE-UCLA)Q495X7
IntAct (EBI)Q495X7
FunCoupENSG00000176979
BioGRIDTRIM60
STRING (EMBL)TRIM60
ZODIACTRIM60
Ontologies - Pathways
QuickGOQ495X7
Ontology : AmiGOintracellular  zinc ion binding  
Ontology : EGO-EBIintracellular  zinc ion binding  
NDEx NetworkTRIM60
Atlas of Cancer Signalling NetworkTRIM60
Wikipedia pathwaysTRIM60
Orthology - Evolution
OrthoDB166655
GeneTree (enSembl)ENSG00000176979
Phylogenetic Trees/Animal Genes : TreeFamTRIM60
HOVERGENQ495X7
HOGENOMQ495X7
Homologs : HomoloGeneTRIM60
Homology/Alignments : Family Browser (UCSC)TRIM60
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM60 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM60
dbVarTRIM60
ClinVarTRIM60
1000_GenomesTRIM60 
Exome Variant ServerTRIM60
ExAC (Exome Aggregation Consortium)TRIM60 (select the gene name)
Genetic variants : HAPMAP166655
Genomic Variants (DGV)TRIM60 [DGVbeta]
DECIPHERTRIM60 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM60 
Mutations
ICGC Data PortalTRIM60 
TCGA Data PortalTRIM60 
Broad Tumor PortalTRIM60
OASIS PortalTRIM60 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM60  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM60
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM60
DgiDB (Drug Gene Interaction Database)TRIM60
DoCM (Curated mutations)TRIM60 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM60 (select a term)
intoGenTRIM60
Cancer3DTRIM60(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM60
Genetic Testing Registry TRIM60
NextProtQ495X7 [Medical]
TSGene166655
GENETestsTRIM60
Target ValidationTRIM60
Huge Navigator TRIM60 [HugePedia]
snp3D : Map Gene to Disease166655
BioCentury BCIQTRIM60
ClinGenTRIM60
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD166655
Chemical/Pharm GKB GenePA134909634
Clinical trialTRIM60
Miscellaneous
canSAR (ICR)TRIM60 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM60
EVEXTRIM60
GoPubMedTRIM60
iHOPTRIM60
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:36:21 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.