Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM61 (tripartite motif containing 61)

Identity

Alias_namesRNF35
ring finger protein 35
tripartite motif-containing 61
Other alias
HGNC (Hugo) TRIM61
LocusID (NCBI) 391712
Atlas_Id 75173
Location 4q32.3  [Link to chromosome band 4q32]
Location_base_pair Starts at 164954446 and ends at 164977666 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FARSB (2q36.1) / TRIM61 (4q32.3)GNAS (20q13.32) / TRIM61 (4q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM61   24339
Cards
Entrez_Gene (NCBI)TRIM61  391712  tripartite motif containing 61
AliasesRNF35
GeneCards (Weizmann)TRIM61
Ensembl hg19 (Hinxton)ENSG00000183439 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183439 [Gene_View]  chr4:164954446-164977666 [Contig_View]  TRIM61 [Vega]
ICGC DataPortalENSG00000183439
TCGA cBioPortalTRIM61
AceView (NCBI)TRIM61
Genatlas (Paris)TRIM61
WikiGenes391712
SOURCE (Princeton)TRIM61
Genetics Home Reference (NIH)TRIM61
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM61  -     chr4:164954446-164977666 -  4q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM61  -     4q32.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM61 - 4q32.3 [CytoView hg19]  TRIM61 - 4q32.3 [CytoView hg38]
Mapping of homologs : NCBITRIM61 [Mapview hg19]  TRIM61 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK296100 BC089393 CN311322
RefSeq transcript (Entrez)NM_001012414
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM61
Cluster EST : UnigeneHs.654633 [ NCBI ]
CGAP (NCI)Hs.654633
Alternative Splicing GalleryENSG00000183439
Gene ExpressionTRIM61 [ NCBI-GEO ]   TRIM61 [ EBI - ARRAY_EXPRESS ]   TRIM61 [ SEEK ]   TRIM61 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM61 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391712
GTEX Portal (Tissue expression)TRIM61
Human Protein AtlasENSG00000183439-TRIM61 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5EBN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5EBN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5EBN2
Splice isoforms : SwissVarQ5EBN2
PhosPhoSitePlusQ5EBN2
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00643   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)TRIM61
DMDM Disease mutations391712
Blocks (Seattle)TRIM61
SuperfamilyQ5EBN2
Human Protein Atlas [tissue]ENSG00000183439-TRIM61 [tissue]
Peptide AtlasQ5EBN2
HPRD18225
IPIIPI00058949   
Protein Interaction databases
DIP (DOE-UCLA)Q5EBN2
IntAct (EBI)Q5EBN2
FunCoupENSG00000183439
BioGRIDTRIM61
STRING (EMBL)TRIM61
ZODIACTRIM61
Ontologies - Pathways
QuickGOQ5EBN2
Ontology : AmiGOintracellular  zinc ion binding  
Ontology : EGO-EBIintracellular  zinc ion binding  
NDEx NetworkTRIM61
Atlas of Cancer Signalling NetworkTRIM61
Wikipedia pathwaysTRIM61
Orthology - Evolution
OrthoDB391712
GeneTree (enSembl)ENSG00000183439
Phylogenetic Trees/Animal Genes : TreeFamTRIM61
HOVERGENQ5EBN2
HOGENOMQ5EBN2
Homologs : HomoloGeneTRIM61
Homology/Alignments : Family Browser (UCSC)TRIM61
Gene fusions - Rearrangements
Fusion: Tumor Portal TRIM61
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM61 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM61
dbVarTRIM61
ClinVarTRIM61
1000_GenomesTRIM61 
Exome Variant ServerTRIM61
ExAC (Exome Aggregation Consortium)ENSG00000183439
GNOMAD BrowserENSG00000183439
Genetic variants : HAPMAP391712
Genomic Variants (DGV)TRIM61 [DGVbeta]
DECIPHERTRIM61 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM61 
Mutations
ICGC Data PortalTRIM61 
TCGA Data PortalTRIM61 
Broad Tumor PortalTRIM61
OASIS PortalTRIM61 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM61  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM61
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM61
DgiDB (Drug Gene Interaction Database)TRIM61
DoCM (Curated mutations)TRIM61 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM61 (select a term)
intoGenTRIM61
Cancer3DTRIM61(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM61
Genetic Testing Registry TRIM61
NextProtQ5EBN2 [Medical]
TSGene391712
GENETestsTRIM61
Target ValidationTRIM61
Huge Navigator TRIM61 [HugePedia]
snp3D : Map Gene to Disease391712
BioCentury BCIQTRIM61
ClinGenTRIM61
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391712
Chemical/Pharm GKB GenePA134868214
Clinical trialTRIM61
Miscellaneous
canSAR (ICR)TRIM61 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM61
EVEXTRIM61
GoPubMedTRIM61
iHOPTRIM61
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:34:01 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.