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TRIM61 (tripartite motif containing 61)

Identity

Alias (NCBI)RNF35
HGNC (Hugo) TRIM61
HGNC Previous nameRNF35
HGNC Previous namering finger protein 35
 tripartite motif-containing 61
LocusID (NCBI) 391712
Atlas_Id 75173
Location 4q32.3  [Link to chromosome band 4q32]
Location_base_pair Starts at 164954446 and ends at 164977657 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FARSB (2q36.1) / TRIM61 (4q32.3)GNAS (20q13.32) / TRIM61 (4q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM61   24339
Cards
Entrez_Gene (NCBI)TRIM61    tripartite motif containing 61
AliasesRNF35
GeneCards (Weizmann)TRIM61
Ensembl hg19 (Hinxton)ENSG00000183439 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183439 [Gene_View]  ENSG00000183439 [Sequence]  chr4:164954446-164977657 [Contig_View]  TRIM61 [Vega]
ICGC DataPortalENSG00000183439
TCGA cBioPortalTRIM61
AceView (NCBI)TRIM61
Genatlas (Paris)TRIM61
SOURCE (Princeton)TRIM61
Genetics Home Reference (NIH)TRIM61
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM61  -     chr4:164954446-164977657 -  4q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM61  -     4q32.3   [Description]    (hg19-Feb_2009)
GoldenPathTRIM61 - 4q32.3 [CytoView hg19]  TRIM61 - 4q32.3 [CytoView hg38]
ImmunoBaseENSG00000183439
Genome Data Viewer NCBITRIM61 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK296100 BC089393 CN311322
RefSeq transcript (Entrez)NM_001012414
Consensus coding sequences : CCDS (NCBI)TRIM61
Gene ExpressionTRIM61 [ NCBI-GEO ]   TRIM61 [ EBI - ARRAY_EXPRESS ]   TRIM61 [ SEEK ]   TRIM61 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM61 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM61 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391712
GTEX Portal (Tissue expression)TRIM61
Human Protein AtlasENSG00000183439-TRIM61 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5EBN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5EBN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5EBN2
PhosPhoSitePlusQ5EBN2
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00643   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)TRIM61
SuperfamilyQ5EBN2
AlphaFold pdb e-kbQ5EBN2   
Human Protein Atlas [tissue]ENSG00000183439-TRIM61 [tissue]
HPRD18225
Protein Interaction databases
DIP (DOE-UCLA)Q5EBN2
IntAct (EBI)Q5EBN2
BioGRIDTRIM61
STRING (EMBL)TRIM61
ZODIACTRIM61
Ontologies - Pathways
QuickGOQ5EBN2
Ontology : AmiGOcytoplasm  zinc ion binding  regulation of gene expression  protein ubiquitination  innate immune response  ubiquitin protein ligase activity  
Ontology : EGO-EBIcytoplasm  zinc ion binding  regulation of gene expression  protein ubiquitination  innate immune response  ubiquitin protein ligase activity  
NDEx NetworkTRIM61
Atlas of Cancer Signalling NetworkTRIM61
Wikipedia pathwaysTRIM61
Orthology - Evolution
OrthoDB391712
GeneTree (enSembl)ENSG00000183439
Phylogenetic Trees/Animal Genes : TreeFamTRIM61
Homologs : HomoloGeneTRIM61
Homology/Alignments : Family Browser (UCSC)TRIM61
Gene fusions - Rearrangements
Fusion : QuiverTRIM61
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM61 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM61
dbVarTRIM61
ClinVarTRIM61
MonarchTRIM61
1000_GenomesTRIM61 
Exome Variant ServerTRIM61
GNOMAD BrowserENSG00000183439
Varsome BrowserTRIM61
ACMGTRIM61 variants
VarityQ5EBN2
Genomic Variants (DGV)TRIM61 [DGVbeta]
DECIPHERTRIM61 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM61 
Mutations
ICGC Data PortalTRIM61 
TCGA Data PortalTRIM61 
Broad Tumor PortalTRIM61
OASIS PortalTRIM61 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM61  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM61
Mutations and Diseases : HGMDTRIM61
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM61
DgiDB (Drug Gene Interaction Database)TRIM61
DoCM (Curated mutations)TRIM61
CIViC (Clinical Interpretations of Variants in Cancer)TRIM61
Cancer3DTRIM61
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRIM61
MedgenTRIM61
Genetic Testing Registry TRIM61
NextProtQ5EBN2 [Medical]
GENETestsTRIM61
Target ValidationTRIM61
Huge Navigator TRIM61 [HugePedia]
ClinGenTRIM61
Clinical trials, drugs, therapy
MyCancerGenomeTRIM61
Protein Interactions : CTDTRIM61
Pharm GKB GenePA134868214
PharosQ5EBN2
Clinical trialTRIM61
Miscellaneous
canSAR (ICR)TRIM61
HarmonizomeTRIM61
DataMed IndexTRIM61
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM61
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:57 CEST 2021

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