Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM62 (tripartite motif containing 62)

Identity

Alias_namestripartite motif-containing 62
Alias_symbol (synonym)FLJ10759
DEAR1
Other alias
HGNC (Hugo) TRIM62
LocusID (NCBI) 55223
Atlas_Id 51075
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 33145402 and ends at 33176550 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM62   25574
Cards
Entrez_Gene (NCBI)TRIM62  55223  tripartite motif containing 62
AliasesDEAR1
GeneCards (Weizmann)TRIM62
Ensembl hg19 (Hinxton)ENSG00000116525 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116525 [Gene_View]  chr1:33145402-33176550 [Contig_View]  TRIM62 [Vega]
ICGC DataPortalENSG00000116525
TCGA cBioPortalTRIM62
AceView (NCBI)TRIM62
Genatlas (Paris)TRIM62
WikiGenes55223
SOURCE (Princeton)TRIM62
Genetics Home Reference (NIH)TRIM62
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM62  -     chr1:33145402-33176550 -  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM62  -     1p35.1   [Description]    (hg19-Feb_2009)
EnsemblTRIM62 - 1p35.1 [CytoView hg19]  TRIM62 - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBITRIM62 [Mapview hg19]  TRIM62 [Mapview hg38]
OMIM616755   
Gene and transcription
Genbank (Entrez)AK001621 AK122896 AK300177 AX775831 BC001222
RefSeq transcript (Entrez)NM_001330483 NM_018207
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM62
Cluster EST : UnigeneHs.656006 [ NCBI ]
CGAP (NCI)Hs.656006
Alternative Splicing GalleryENSG00000116525
Gene ExpressionTRIM62 [ NCBI-GEO ]   TRIM62 [ EBI - ARRAY_EXPRESS ]   TRIM62 [ SEEK ]   TRIM62 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55223
GTEX Portal (Tissue expression)TRIM62
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVG3
Splice isoforms : SwissVarQ9BVG3
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ9BVG3
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM62
DMDM Disease mutations55223
Blocks (Seattle)TRIM62
SuperfamilyQ9BVG3
Human Protein AtlasENSG00000116525
Peptide AtlasQ9BVG3
HPRD07697
IPIIPI00306309   IPI01014393   IPI00644707   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVG3
IntAct (EBI)Q9BVG3
FunCoupENSG00000116525
BioGRIDTRIM62
STRING (EMBL)TRIM62
ZODIACTRIM62
Ontologies - Pathways
QuickGOQ9BVG3
Ontology : AmiGOubiquitin-protein transferase activity  cytoplasm  cytosol  zinc ion binding  negative regulation of epithelial to mesenchymal transition  protein ubiquitination  negative regulation of viral transcription  positive regulation of I-kappaB kinase/NF-kappaB signaling  innate immune response  regulation of viral entry into host cell  positive regulation of sequence-specific DNA binding transcription factor activity  positive regulation of NF-kappaB transcription factor activity  interferon-gamma-mediated signaling pathway  regulation of viral release from host cell  
Ontology : EGO-EBIubiquitin-protein transferase activity  cytoplasm  cytosol  zinc ion binding  negative regulation of epithelial to mesenchymal transition  protein ubiquitination  negative regulation of viral transcription  positive regulation of I-kappaB kinase/NF-kappaB signaling  innate immune response  regulation of viral entry into host cell  positive regulation of sequence-specific DNA binding transcription factor activity  positive regulation of NF-kappaB transcription factor activity  interferon-gamma-mediated signaling pathway  regulation of viral release from host cell  
NDEx NetworkTRIM62
Atlas of Cancer Signalling NetworkTRIM62
Wikipedia pathwaysTRIM62
Orthology - Evolution
OrthoDB55223
GeneTree (enSembl)ENSG00000116525
Phylogenetic Trees/Animal Genes : TreeFamTRIM62
HOVERGENQ9BVG3
HOGENOMQ9BVG3
Homologs : HomoloGeneTRIM62
Homology/Alignments : Family Browser (UCSC)TRIM62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM62
dbVarTRIM62
ClinVarTRIM62
1000_GenomesTRIM62 
Exome Variant ServerTRIM62
ExAC (Exome Aggregation Consortium)TRIM62 (select the gene name)
Genetic variants : HAPMAP55223
Genomic Variants (DGV)TRIM62 [DGVbeta]
DECIPHERTRIM62 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM62 
Mutations
ICGC Data PortalTRIM62 
TCGA Data PortalTRIM62 
Broad Tumor PortalTRIM62
OASIS PortalTRIM62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM62
DgiDB (Drug Gene Interaction Database)TRIM62
DoCM (Curated mutations)TRIM62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM62 (select a term)
intoGenTRIM62
Cancer3DTRIM62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616755   
Orphanet
MedgenTRIM62
Genetic Testing Registry TRIM62
NextProtQ9BVG3 [Medical]
TSGene55223
GENETestsTRIM62
Target ValidationTRIM62
Huge Navigator TRIM62 [HugePedia]
snp3D : Map Gene to Disease55223
BioCentury BCIQTRIM62
ClinGenTRIM62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55223
Chemical/Pharm GKB GenePA134890243
Clinical trialTRIM62
Miscellaneous
canSAR (ICR)TRIM62 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM62
EVEXTRIM62
GoPubMedTRIM62
iHOPTRIM62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:00:54 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.