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TRIM64 (tripartite motif containing 64)

Identity

Alias (NCBI)C11orf28
TRIM64A
HGNC (Hugo) TRIM64
HGNC Alias symbTRIM64A
HGNC Previous nameC11orf28
HGNC Previous namechromosome 11 open reading frame 28
 tripartite motif-containing 64
LocusID (NCBI) 120146
Atlas_Id 75174
Location 11q14.3  [Link to chromosome band 11q14]
Location_base_pair Starts at 89968504 and ends at 89974072 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM64   14663
Cards
Entrez_Gene (NCBI)TRIM64    tripartite motif containing 64
AliasesC11orf28; TRIM64A
GeneCards (Weizmann)TRIM64
Ensembl hg19 (Hinxton)ENSG00000204450 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204450 [Gene_View]  ENSG00000204450 [Sequence]  chr11:89968504-89974072 [Contig_View]  TRIM64 [Vega]
ICGC DataPortalENSG00000204450
TCGA cBioPortalTRIM64
AceView (NCBI)TRIM64
Genatlas (Paris)TRIM64
SOURCE (Princeton)TRIM64
Genetics Home Reference (NIH)TRIM64
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM64  -     chr11:89968504-89974072 +  11q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM64  -     11q14.3   [Description]    (hg19-Feb_2009)
GoldenPathTRIM64 - 11q14.3 [CytoView hg19]  TRIM64 - 11q14.3 [CytoView hg38]
ImmunoBaseENSG00000204450
Genome Data Viewer NCBITRIM64 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001136486
Consensus coding sequences : CCDS (NCBI)TRIM64
Gene ExpressionTRIM64 [ NCBI-GEO ]   TRIM64 [ EBI - ARRAY_EXPRESS ]   TRIM64 [ SEEK ]   TRIM64 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM64 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM64 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120146
GTEX Portal (Tissue expression)TRIM64
Human Protein AtlasENSG00000204450-TRIM64 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGJ6
PhosPhoSitePlusA6NGJ6
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    B30.2/SPRY_sf    Butyrophylin_SPRY    ConA-like_dom_sf    SPRY_dom    Znf_B-box    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam00622    pfam00097   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM64
SuperfamilyA6NGJ6
AlphaFold pdb e-kbA6NGJ6   
Human Protein Atlas [tissue]ENSG00000204450-TRIM64 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A6NGJ6
IntAct (EBI)A6NGJ6
BioGRIDTRIM64
STRING (EMBL)TRIM64
ZODIACTRIM64
Ontologies - Pathways
QuickGOA6NGJ6
Ontology : AmiGOcytoplasm  zinc ion binding  regulation of gene expression  protein ubiquitination  innate immune response  ubiquitin protein ligase activity  
Ontology : EGO-EBIcytoplasm  zinc ion binding  regulation of gene expression  protein ubiquitination  innate immune response  ubiquitin protein ligase activity  
NDEx NetworkTRIM64
Atlas of Cancer Signalling NetworkTRIM64
Wikipedia pathwaysTRIM64
Orthology - Evolution
OrthoDB120146
GeneTree (enSembl)ENSG00000204450
Phylogenetic Trees/Animal Genes : TreeFamTRIM64
Homologs : HomoloGeneTRIM64
Homology/Alignments : Family Browser (UCSC)TRIM64
Gene fusions - Rearrangements
Fusion : QuiverTRIM64
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM64 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM64
dbVarTRIM64
ClinVarTRIM64
MonarchTRIM64
1000_GenomesTRIM64 
Exome Variant ServerTRIM64
GNOMAD BrowserENSG00000204450
Varsome BrowserTRIM64
ACMGTRIM64 variants
VarityA6NGJ6
Genomic Variants (DGV)TRIM64 [DGVbeta]
DECIPHERTRIM64 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM64 
Mutations
ICGC Data PortalTRIM64 
TCGA Data PortalTRIM64 
Broad Tumor PortalTRIM64
OASIS PortalTRIM64 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM64  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM64
Mutations and Diseases : HGMDTRIM64
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM64
DgiDB (Drug Gene Interaction Database)TRIM64
DoCM (Curated mutations)TRIM64
CIViC (Clinical Interpretations of Variants in Cancer)TRIM64
Cancer3DTRIM64
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRIM64
MedgenTRIM64
Genetic Testing Registry TRIM64
NextProtA6NGJ6 [Medical]
GENETestsTRIM64
Target ValidationTRIM64
Huge Navigator TRIM64 [HugePedia]
ClinGenTRIM64
Clinical trials, drugs, therapy
MyCancerGenomeTRIM64
Protein Interactions : CTDTRIM64
Pharm GKB GenePA25492
PharosA6NGJ6
Clinical trialTRIM64
Miscellaneous
canSAR (ICR)TRIM64
HarmonizomeTRIM64
DataMed IndexTRIM64
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM64
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:58 CEST 2021

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