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TRIM64 (tripartite motif containing 64)

Identity

Alias_namesC11orf28
chromosome 11 open reading frame 28
tripartite motif-containing 64
Alias_symbol (synonym)TRIM64A
Other alias
HGNC (Hugo) TRIM64
LocusID (NCBI) 120146
Atlas_Id 75174
Location 11q14.3  [Link to chromosome band 11q14]
Location_base_pair Starts at 89968504 and ends at 89974072 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM64   14663
Cards
Entrez_Gene (NCBI)TRIM64  120146  tripartite motif containing 64
AliasesC11orf28; TRIM64A
GeneCards (Weizmann)TRIM64
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:89968504-89974072 [Contig_View]  TRIM64 [Vega]
TCGA cBioPortalTRIM64
AceView (NCBI)TRIM64
Genatlas (Paris)TRIM64
WikiGenes120146
SOURCE (Princeton)TRIM64
Genetics Home Reference (NIH)TRIM64
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM64  -     chr11:89968504-89974072 +  11q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM64  -     11q14.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM64 - 11q14.3 [CytoView hg19]  TRIM64 - 11q14.3 [CytoView hg38]
Mapping of homologs : NCBITRIM64 [Mapview hg19]  TRIM64 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001136486
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM64
Cluster EST : UnigeneHs.454490 [ NCBI ]
CGAP (NCI)Hs.454490
Gene ExpressionTRIM64 [ NCBI-GEO ]   TRIM64 [ EBI - ARRAY_EXPRESS ]   TRIM64 [ SEEK ]   TRIM64 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM64 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120146
GTEX Portal (Tissue expression)TRIM64
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGJ6
Splice isoforms : SwissVarA6NGJ6
PhosPhoSitePlusA6NGJ6
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam00622    pfam00097   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM64
DMDM Disease mutations120146
Blocks (Seattle)TRIM64
SuperfamilyA6NGJ6
Peptide AtlasA6NGJ6
IPIIPI00051170   
Protein Interaction databases
DIP (DOE-UCLA)A6NGJ6
IntAct (EBI)A6NGJ6
BioGRIDTRIM64
STRING (EMBL)TRIM64
ZODIACTRIM64
Ontologies - Pathways
QuickGOA6NGJ6
Ontology : AmiGOintracellular  zinc ion binding  
Ontology : EGO-EBIintracellular  zinc ion binding  
NDEx NetworkTRIM64
Atlas of Cancer Signalling NetworkTRIM64
Wikipedia pathwaysTRIM64
Orthology - Evolution
OrthoDB120146
Phylogenetic Trees/Animal Genes : TreeFamTRIM64
HOVERGENA6NGJ6
HOGENOMA6NGJ6
Homologs : HomoloGeneTRIM64
Homology/Alignments : Family Browser (UCSC)TRIM64
Gene fusions - Rearrangements
Fusion: Tumor Portal TRIM64
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM64 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM64
dbVarTRIM64
ClinVarTRIM64
1000_GenomesTRIM64 
Exome Variant ServerTRIM64
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP120146
Genomic Variants (DGV)TRIM64 [DGVbeta]
DECIPHERTRIM64 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM64 
Mutations
ICGC Data PortalTRIM64 
TCGA Data PortalTRIM64 
Broad Tumor PortalTRIM64
OASIS PortalTRIM64 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRIM64
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM64
DgiDB (Drug Gene Interaction Database)TRIM64
DoCM (Curated mutations)TRIM64 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM64 (select a term)
intoGenTRIM64
Cancer3DTRIM64(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM64
Genetic Testing Registry TRIM64
NextProtA6NGJ6 [Medical]
TSGene120146
GENETestsTRIM64
Target ValidationTRIM64
Huge Navigator TRIM64 [HugePedia]
snp3D : Map Gene to Disease120146
BioCentury BCIQTRIM64
ClinGenTRIM64
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120146
Chemical/Pharm GKB GenePA25492
Clinical trialTRIM64
Miscellaneous
canSAR (ICR)TRIM64 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM64
EVEXTRIM64
GoPubMedTRIM64
iHOPTRIM64
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:34:02 CET 2017

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