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TRIM64C (tripartite motif containing 64C)

Identity

Alias_namestripartite motif-containing 64C
Other alias-
HGNC (Hugo) TRIM64C
LocusID (NCBI) 646754
Atlas_Id 75176
Location 11p11.12  [Link to chromosome band 11p11]
Location_base_pair Starts at 49075266 and ends at 49080664 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM64C   37148
Cards
Entrez_Gene (NCBI)TRIM64C  646754  tripartite motif containing 64C
Aliases
GeneCards (Weizmann)TRIM64C
Ensembl hg19 (Hinxton)ENSG00000214891 [Gene_View]  chr11:49075266-49080664 [Contig_View]  TRIM64C [Vega]
Ensembl hg38 (Hinxton)ENSG00000214891 [Gene_View]  chr11:49075266-49080664 [Contig_View]  TRIM64C [Vega]
ICGC DataPortalENSG00000214891
TCGA cBioPortalTRIM64C
AceView (NCBI)TRIM64C
Genatlas (Paris)TRIM64C
WikiGenes646754
SOURCE (Princeton)TRIM64C
Genetics Home Reference (NIH)TRIM64C
Genomic and cartography
GoldenPath hg19 (UCSC)TRIM64C  -     chr11:49075266-49080664 -  11p11.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRIM64C  -     11p11.12   [Description]    (hg38-Dec_2013)
EnsemblTRIM64C - 11p11.12 [CytoView hg19]  TRIM64C - 11p11.12 [CytoView hg38]
Mapping of homologs : NCBITRIM64C [Mapview hg19]  TRIM64C [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001206631
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)TRIM64C
Cluster EST : UnigeneHs.740240 [ NCBI ]
CGAP (NCI)Hs.740240
Alternative Splicing GalleryENSG00000214891
Gene ExpressionTRIM64C [ NCBI-GEO ]   TRIM64C [ EBI - ARRAY_EXPRESS ]   TRIM64C [ SEEK ]   TRIM64C [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM64C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646754
GTEX Portal (Tissue expression)TRIM64C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NLI5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NLI5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NLI5
Splice isoforms : SwissVarA6NLI5
PhosPhoSitePlusA6NLI5
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM64C
DMDM Disease mutations646754
Blocks (Seattle)TRIM64C
SuperfamilyA6NLI5
Human Protein AtlasENSG00000214891
Peptide AtlasA6NLI5
IPIIPI00888634   
Protein Interaction databases
DIP (DOE-UCLA)A6NLI5
IntAct (EBI)A6NLI5
FunCoupENSG00000214891
BioGRIDTRIM64C
STRING (EMBL)TRIM64C
ZODIACTRIM64C
Ontologies - Pathways
QuickGOA6NLI5
Ontology : AmiGOintracellular  zinc ion binding  
Ontology : EGO-EBIintracellular  zinc ion binding  
NDEx NetworkTRIM64C
Atlas of Cancer Signalling NetworkTRIM64C
Wikipedia pathwaysTRIM64C
Orthology - Evolution
OrthoDB646754
GeneTree (enSembl)ENSG00000214891
Phylogenetic Trees/Animal Genes : TreeFamTRIM64C
HOVERGENA6NLI5
HOGENOMA6NLI5
Homologs : HomoloGeneTRIM64C
Homology/Alignments : Family Browser (UCSC)TRIM64C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM64C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM64C
dbVarTRIM64C
ClinVarTRIM64C
1000_GenomesTRIM64C 
Exome Variant ServerTRIM64C
ExAC (Exome Aggregation Consortium)TRIM64C (select the gene name)
Genetic variants : HAPMAP646754
Genomic Variants (DGV)TRIM64C [DGVbeta]
DECIPHER (Syndromes)11:49075266-49080664  ENSG00000214891
CONAN: Copy Number AnalysisTRIM64C 
Mutations
ICGC Data PortalTRIM64C 
TCGA Data PortalTRIM64C 
Broad Tumor PortalTRIM64C
OASIS PortalTRIM64C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM64C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM64C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM64C
DgiDB (Drug Gene Interaction Database)TRIM64C
DoCM (Curated mutations)TRIM64C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM64C (select a term)
intoGenTRIM64C
Cancer3DTRIM64C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM64C
Genetic Testing Registry TRIM64C
NextProtA6NLI5 [Medical]
TSGene646754
GENETestsTRIM64C
Huge Navigator TRIM64C [HugePedia]
snp3D : Map Gene to Disease646754
BioCentury BCIQTRIM64C
ClinGenTRIM64C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646754
Chemical/Pharm GKB GenePA165543740
Clinical trialTRIM64C
Miscellaneous
canSAR (ICR)TRIM64C (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM64C
EVEXTRIM64C
GoPubMedTRIM64C
iHOPTRIM64C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:46 CET 2017

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