Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM65 (tripartite motif containing 65)

Identity

Alias_namestripartite motif-containing 65
Other alias4732463G12Rik
HGNC (Hugo) TRIM65
LocusID (NCBI) 201292
Atlas_Id 56357
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75888960 and ends at 75897003 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRIM65 (17q25.1) / SRP68 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM65   27316
Cards
Entrez_Gene (NCBI)TRIM65  201292  tripartite motif containing 65
Aliases4732463G12Rik
GeneCards (Weizmann)TRIM65
Ensembl hg19 (Hinxton)ENSG00000141569 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141569 [Gene_View]  chr17:75888960-75897003 [Contig_View]  TRIM65 [Vega]
ICGC DataPortalENSG00000141569
TCGA cBioPortalTRIM65
AceView (NCBI)TRIM65
Genatlas (Paris)TRIM65
WikiGenes201292
SOURCE (Princeton)TRIM65
Genetics Home Reference (NIH)TRIM65
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM65  -     chr17:75888960-75897003 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM65  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblTRIM65 - 17q25.1 [CytoView hg19]  TRIM65 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBITRIM65 [Mapview hg19]  TRIM65 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI242308 BC006138 BC013181 BC021259 BC073831
RefSeq transcript (Entrez)NM_001256124 NM_173547
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM65
Cluster EST : UnigeneHs.189823 [ NCBI ]
CGAP (NCI)Hs.189823
Alternative Splicing GalleryENSG00000141569
Gene ExpressionTRIM65 [ NCBI-GEO ]   TRIM65 [ EBI - ARRAY_EXPRESS ]   TRIM65 [ SEEK ]   TRIM65 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM65 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201292
GTEX Portal (Tissue expression)TRIM65
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PJ69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PJ69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PJ69
Splice isoforms : SwissVarQ6PJ69
PhosPhoSitePlusQ6PJ69
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam00622    pfam00643    pfam00097   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM65
DMDM Disease mutations201292
Blocks (Seattle)TRIM65
SuperfamilyQ6PJ69
Human Protein AtlasENSG00000141569
Peptide AtlasQ6PJ69
HPRD15569
IPIIPI00419451   IPI01012655   IPI01012010   
Protein Interaction databases
DIP (DOE-UCLA)Q6PJ69
IntAct (EBI)Q6PJ69
FunCoupENSG00000141569
BioGRIDTRIM65
STRING (EMBL)TRIM65
ZODIACTRIM65
Ontologies - Pathways
QuickGOQ6PJ69
Ontology : AmiGOnucleus  nucleoplasm  cytosol  zinc ion binding  positive regulation of autophagy  
Ontology : EGO-EBInucleus  nucleoplasm  cytosol  zinc ion binding  positive regulation of autophagy  
NDEx NetworkTRIM65
Atlas of Cancer Signalling NetworkTRIM65
Wikipedia pathwaysTRIM65
Orthology - Evolution
OrthoDB201292
GeneTree (enSembl)ENSG00000141569
Phylogenetic Trees/Animal Genes : TreeFamTRIM65
HOVERGENQ6PJ69
HOGENOMQ6PJ69
Homologs : HomoloGeneTRIM65
Homology/Alignments : Family Browser (UCSC)TRIM65
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM65 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM65
dbVarTRIM65
ClinVarTRIM65
1000_GenomesTRIM65 
Exome Variant ServerTRIM65
ExAC (Exome Aggregation Consortium)TRIM65 (select the gene name)
Genetic variants : HAPMAP201292
Genomic Variants (DGV)TRIM65 [DGVbeta]
DECIPHERTRIM65 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM65 
Mutations
ICGC Data PortalTRIM65 
TCGA Data PortalTRIM65 
Broad Tumor PortalTRIM65
OASIS PortalTRIM65 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM65  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM65
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM65
DgiDB (Drug Gene Interaction Database)TRIM65
DoCM (Curated mutations)TRIM65 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM65 (select a term)
intoGenTRIM65
Cancer3DTRIM65(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM65
Genetic Testing Registry TRIM65
NextProtQ6PJ69 [Medical]
TSGene201292
GENETestsTRIM65
Target ValidationTRIM65
Huge Navigator TRIM65 [HugePedia]
snp3D : Map Gene to Disease201292
BioCentury BCIQTRIM65
ClinGenTRIM65
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201292
Chemical/Pharm GKB GenePA134877726
Clinical trialTRIM65
Miscellaneous
canSAR (ICR)TRIM65 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM65
EVEXTRIM65
GoPubMedTRIM65
iHOPTRIM65
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:17:43 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.