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TRIM66 (tripartite motif containing 66)

Identity

Alias_namesC11orf29
chromosome 11 open reading frame 29
tripartite motif-containing 66
Alias_symbol (synonym)KIAA0298
TIF1D
Other aliasTIF1DELTA
HGNC (Hugo) TRIM66
LocusID (NCBI) 9866
Atlas_Id 55891
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 8612037 and ends at 8658836 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRIM66 (11p15.4) / SH3GLB1 (1p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM66   29005
Cards
Entrez_Gene (NCBI)TRIM66  9866  tripartite motif containing 66
AliasesC11orf29; TIF1D; TIF1DELTA
GeneCards (Weizmann)TRIM66
Ensembl hg19 (Hinxton)ENSG00000166436 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166436 [Gene_View]  chr11:8612037-8658836 [Contig_View]  TRIM66 [Vega]
ICGC DataPortalENSG00000166436
TCGA cBioPortalTRIM66
AceView (NCBI)TRIM66
Genatlas (Paris)TRIM66
WikiGenes9866
SOURCE (Princeton)TRIM66
Genetics Home Reference (NIH)TRIM66
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM66  -     chr11:8612037-8658836 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM66  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblTRIM66 - 11p15.4 [CytoView hg19]  TRIM66 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBITRIM66 [Mapview hg19]  TRIM66 [Mapview hg38]
OMIM612000   
Gene and transcription
Genbank (Entrez)AB002296 AK000908 AK307240 AK308310 BC031354
RefSeq transcript (Entrez)NM_014818
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM66
Cluster EST : UnigeneHs.716965 [ NCBI ]
CGAP (NCI)Hs.716965
Alternative Splicing GalleryENSG00000166436
Gene ExpressionTRIM66 [ NCBI-GEO ]   TRIM66 [ EBI - ARRAY_EXPRESS ]   TRIM66 [ SEEK ]   TRIM66 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM66 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9866
GTEX Portal (Tissue expression)TRIM66
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15016   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15016  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15016
Splice isoforms : SwissVarO15016
PhosPhoSitePlusO15016
Domaine pattern : Prosite (Expaxy)BROMODOMAIN_2 (PS50014)    ZF_BBOX (PS50119)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Bbox_C    Bromodomain    Zinc_finger_PHD-type_CS    Znf_B-box    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)Bromodomain (PF00439)    PHD (PF00628)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00439    pfam00628    pfam00643   
Domain families : Smart (EMBL)BBC (SM00502)  BBOX (SM00336)  BROMO (SM00297)  PHD (SM00249)  
Conserved Domain (NCBI)TRIM66
DMDM Disease mutations9866
Blocks (Seattle)TRIM66
SuperfamilyO15016
Human Protein AtlasENSG00000166436
Peptide AtlasO15016
IPIIPI00941834   IPI00004420   IPI00982045   
Protein Interaction databases
DIP (DOE-UCLA)O15016
IntAct (EBI)O15016
FunCoupENSG00000166436
BioGRIDTRIM66
STRING (EMBL)TRIM66
ZODIACTRIM66
Ontologies - Pathways
QuickGOO15016
Ontology : AmiGOnucleoplasm  zinc ion binding  aggresome  
Ontology : EGO-EBInucleoplasm  zinc ion binding  aggresome  
NDEx NetworkTRIM66
Atlas of Cancer Signalling NetworkTRIM66
Wikipedia pathwaysTRIM66
Orthology - Evolution
OrthoDB9866
GeneTree (enSembl)ENSG00000166436
Phylogenetic Trees/Animal Genes : TreeFamTRIM66
HOVERGENO15016
HOGENOMO15016
Homologs : HomoloGeneTRIM66
Homology/Alignments : Family Browser (UCSC)TRIM66
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM66 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM66
dbVarTRIM66
ClinVarTRIM66
1000_GenomesTRIM66 
Exome Variant ServerTRIM66
ExAC (Exome Aggregation Consortium)TRIM66 (select the gene name)
Genetic variants : HAPMAP9866
Genomic Variants (DGV)TRIM66 [DGVbeta]
DECIPHERTRIM66 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM66 
Mutations
ICGC Data PortalTRIM66 
TCGA Data PortalTRIM66 
Broad Tumor PortalTRIM66
OASIS PortalTRIM66 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM66  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM66
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM66
DgiDB (Drug Gene Interaction Database)TRIM66
DoCM (Curated mutations)TRIM66 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM66 (select a term)
intoGenTRIM66
Cancer3DTRIM66(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612000   
Orphanet
MedgenTRIM66
Genetic Testing Registry TRIM66
NextProtO15016 [Medical]
TSGene9866
GENETestsTRIM66
Huge Navigator TRIM66 [HugePedia]
snp3D : Map Gene to Disease9866
BioCentury BCIQTRIM66
ClinGenTRIM66
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9866
Chemical/Pharm GKB GenePA134954583
Clinical trialTRIM66
Miscellaneous
canSAR (ICR)TRIM66 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM66
EVEXTRIM66
GoPubMedTRIM66
iHOPTRIM66
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:42:18 CEST 2017

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