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TRIM66 (tripartite motif containing 66)

Identity

Alias (NCBI)C11orf29
TIF1D
TIF1DELTA
HGNC (Hugo) TRIM66
HGNC Alias symbKIAA0298
TIF1D
HGNC Previous nameC11orf29
HGNC Previous namechromosome 11 open reading frame 29
 tripartite motif-containing 66
LocusID (NCBI) 9866
Atlas_Id 55891
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 8612040 and ends at 8658886 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRIM66 (11p15.4) / SH3GLB1 (1p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM66   29005
Cards
Entrez_Gene (NCBI)TRIM66    tripartite motif containing 66
AliasesC11orf29; TIF1D; TIF1DELTA
GeneCards (Weizmann)TRIM66
Ensembl hg19 (Hinxton)ENSG00000166436 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166436 [Gene_View]  ENSG00000166436 [Sequence]  chr11:8612040-8658886 [Contig_View]  TRIM66 [Vega]
ICGC DataPortalENSG00000166436
TCGA cBioPortalTRIM66
AceView (NCBI)TRIM66
Genatlas (Paris)TRIM66
SOURCE (Princeton)TRIM66
Genetics Home Reference (NIH)TRIM66
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM66  -     chr11:8612040-8658886 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM66  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathTRIM66 - 11p15.4 [CytoView hg19]  TRIM66 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000166436
Genome Data Viewer NCBITRIM66 [Mapview hg19]  
OMIM612000   
Gene and transcription
Genbank (Entrez)AB002296 AK000908 AK307240 AK308310 BC031354
RefSeq transcript (Entrez)NM_001388022 NM_001388023 NM_001388024 NM_014818
Consensus coding sequences : CCDS (NCBI)TRIM66
Gene ExpressionTRIM66 [ NCBI-GEO ]   TRIM66 [ EBI - ARRAY_EXPRESS ]   TRIM66 [ SEEK ]   TRIM66 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM66 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM66 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9866
GTEX Portal (Tissue expression)TRIM66
Human Protein AtlasENSG00000166436-TRIM66 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15016   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15016  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15016
PhosPhoSitePlusO15016
Domaine pattern : Prosite (Expaxy)BROMODOMAIN_2 (PS50014)    ZF_BBOX (PS50119)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)   
Domains : Interpro (EBI)Bbox_C    Bromodomain    Bromodomain-like_sf    Trim66    Zinc_finger_PHD-type_CS    Znf_B-box    Znf_FYVE_PHD    Znf_PHD    Znf_PHD-finger   
Domain families : Pfam (Sanger)Bromodomain (PF00439)    PHD (PF00628)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00439    pfam00628    pfam00643   
Domain families : Smart (EMBL)BBC (SM00502)  BBOX (SM00336)  BROMO (SM00297)  PHD (SM00249)  
Conserved Domain (NCBI)TRIM66
PDB (RSDB)6IET    6IEU   
PDB Europe6IET    6IEU   
PDB (PDBSum)6IET    6IEU   
PDB (IMB)6IET    6IEU   
Structural Biology KnowledgeBase6IET    6IEU   
SCOP (Structural Classification of Proteins)6IET    6IEU   
CATH (Classification of proteins structures)6IET    6IEU   
SuperfamilyO15016
AlphaFold pdb e-kbO15016   
Human Protein Atlas [tissue]ENSG00000166436-TRIM66 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O15016
IntAct (EBI)O15016
BioGRIDTRIM66
STRING (EMBL)TRIM66
ZODIACTRIM66
Ontologies - Pathways
QuickGOO15016
Ontology : AmiGOnucleoplasm  zinc ion binding  aggresome  
Ontology : EGO-EBInucleoplasm  zinc ion binding  aggresome  
NDEx NetworkTRIM66
Atlas of Cancer Signalling NetworkTRIM66
Wikipedia pathwaysTRIM66
Orthology - Evolution
OrthoDB9866
GeneTree (enSembl)ENSG00000166436
Phylogenetic Trees/Animal Genes : TreeFamTRIM66
Homologs : HomoloGeneTRIM66
Homology/Alignments : Family Browser (UCSC)TRIM66
Gene fusions - Rearrangements
Fusion : QuiverTRIM66
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM66 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM66
dbVarTRIM66
ClinVarTRIM66
MonarchTRIM66
1000_GenomesTRIM66 
Exome Variant ServerTRIM66
GNOMAD BrowserENSG00000166436
Varsome BrowserTRIM66
ACMGTRIM66 variants
VarityO15016
Genomic Variants (DGV)TRIM66 [DGVbeta]
DECIPHERTRIM66 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM66 
Mutations
ICGC Data PortalTRIM66 
TCGA Data PortalTRIM66 
Broad Tumor PortalTRIM66
OASIS PortalTRIM66 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM66  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM66
Mutations and Diseases : HGMDTRIM66
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM66
DgiDB (Drug Gene Interaction Database)TRIM66
DoCM (Curated mutations)TRIM66
CIViC (Clinical Interpretations of Variants in Cancer)TRIM66
Cancer3DTRIM66
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612000   
Orphanet
DisGeNETTRIM66
MedgenTRIM66
Genetic Testing Registry TRIM66
NextProtO15016 [Medical]
GENETestsTRIM66
Target ValidationTRIM66
Huge Navigator TRIM66 [HugePedia]
ClinGenTRIM66
Clinical trials, drugs, therapy
MyCancerGenomeTRIM66
Protein Interactions : CTDTRIM66
Pharm GKB GenePA134954583
PharosO15016
Clinical trialTRIM66
Miscellaneous
canSAR (ICR)TRIM66
HarmonizomeTRIM66
DataMed IndexTRIM66
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM66
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:25 CEST 2021

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