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TRIM67 (tripartite motif containing 67)

Identity

Alias (NCBI)TNL
HGNC (Hugo) TRIM67
HGNC Alias symbTNL
HGNC Previous nametripartite motif-containing 67
LocusID (NCBI) 440730
Atlas_Id 75179
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 231162928 and ends at 231221564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GNPAT (1q42.2) / TRIM67 (1q42.2)LGALS8 (1q43) / TRIM67 (1q42.2)GNPAT TRIM67
LGALS8 TRIM67

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM67   31859
Cards
Entrez_Gene (NCBI)TRIM67    tripartite motif containing 67
AliasesTNL
GeneCards (Weizmann)TRIM67
Ensembl hg19 (Hinxton)ENSG00000119283 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119283 [Gene_View]  ENSG00000119283 [Sequence]  chr1:231162928-231221564 [Contig_View]  TRIM67 [Vega]
ICGC DataPortalENSG00000119283
TCGA cBioPortalTRIM67
AceView (NCBI)TRIM67
Genatlas (Paris)TRIM67
SOURCE (Princeton)TRIM67
Genetics Home Reference (NIH)TRIM67
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM67  -     chr1:231162928-231221564 +  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM67  -     1q42.2   [Description]    (hg19-Feb_2009)
GoldenPathTRIM67 - 1q42.2 [CytoView hg19]  TRIM67 - 1q42.2 [CytoView hg38]
ImmunoBaseENSG00000119283
Genome Data Viewer NCBITRIM67 [Mapview hg19]  
OMIM610584   
Gene and transcription
Genbank (Entrez)AK055338 AK126782 AY253917 CR627464
RefSeq transcript (Entrez)NM_001004342 NM_001300889
Consensus coding sequences : CCDS (NCBI)TRIM67
Gene ExpressionTRIM67 [ NCBI-GEO ]   TRIM67 [ EBI - ARRAY_EXPRESS ]   TRIM67 [ SEEK ]   TRIM67 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM67 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM67 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440730
GTEX Portal (Tissue expression)TRIM67
Human Protein AtlasENSG00000119283-TRIM67 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZTA4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZTA4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZTA4
PhosPhoSitePlusQ6ZTA4
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    COS (PS51262)    FN3 (PS50853)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)   
Domains : Interpro (EBI)B30.2/SPRY    B30.2/SPRY_sf    Bbox_C    ConA-like_dom_sf    COS_domain    FN3_dom    FN3_sf    Ig-like_fold    SPRY_dom    Znf_B-box    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)fn3 (PF00041)    SPRY (PF00622)    zf-B_box (PF00643)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam00041    pfam00622    pfam00643    pfam00097   
Domain families : Smart (EMBL)BBC (SM00502)  BBOX (SM00336)  FN3 (SM00060)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM67
SuperfamilyQ6ZTA4
AlphaFold pdb e-kbQ6ZTA4   
Human Protein Atlas [tissue]ENSG00000119283-TRIM67 [tissue]
HPRD15570
Protein Interaction databases
DIP (DOE-UCLA)Q6ZTA4
IntAct (EBI)Q6ZTA4
BioGRIDTRIM67
STRING (EMBL)TRIM67
ZODIACTRIM67
Ontologies - Pathways
QuickGOQ6ZTA4
Ontology : AmiGOcytoplasm  cytoskeleton  zinc ion binding  positive regulation of neuron projection development  negative regulation of Ras protein signal transduction  regulation of cellular protein localization  positive regulation of ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIcytoplasm  cytoskeleton  zinc ion binding  positive regulation of neuron projection development  negative regulation of Ras protein signal transduction  regulation of cellular protein localization  positive regulation of ubiquitin-dependent protein catabolic process  
NDEx NetworkTRIM67
Atlas of Cancer Signalling NetworkTRIM67
Wikipedia pathwaysTRIM67
Orthology - Evolution
OrthoDB440730
GeneTree (enSembl)ENSG00000119283
Phylogenetic Trees/Animal Genes : TreeFamTRIM67
Homologs : HomoloGeneTRIM67
Homology/Alignments : Family Browser (UCSC)TRIM67
Gene fusions - Rearrangements
Fusion : QuiverTRIM67
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM67 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM67
dbVarTRIM67
ClinVarTRIM67
MonarchTRIM67
1000_GenomesTRIM67 
Exome Variant ServerTRIM67
GNOMAD BrowserENSG00000119283
Varsome BrowserTRIM67
ACMGTRIM67 variants
VarityQ6ZTA4
Genomic Variants (DGV)TRIM67 [DGVbeta]
DECIPHERTRIM67 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM67 
Mutations
ICGC Data PortalTRIM67 
TCGA Data PortalTRIM67 
Broad Tumor PortalTRIM67
OASIS PortalTRIM67 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM67  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM67
Mutations and Diseases : HGMDTRIM67
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM67
DgiDB (Drug Gene Interaction Database)TRIM67
DoCM (Curated mutations)TRIM67
CIViC (Clinical Interpretations of Variants in Cancer)TRIM67
Cancer3DTRIM67
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610584   
Orphanet
DisGeNETTRIM67
MedgenTRIM67
Genetic Testing Registry TRIM67
NextProtQ6ZTA4 [Medical]
GENETestsTRIM67
Target ValidationTRIM67
Huge Navigator TRIM67 [HugePedia]
ClinGenTRIM67
Clinical trials, drugs, therapy
MyCancerGenomeTRIM67
Protein Interactions : CTDTRIM67
Pharm GKB GenePA134947738
PharosQ6ZTA4
Clinical trialTRIM67
Miscellaneous
canSAR (ICR)TRIM67
HarmonizomeTRIM67
DataMed IndexTRIM67
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM67
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:59 CEST 2021

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