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TRIM67 (tripartite motif containing 67)

Identity

Alias_namestripartite motif-containing 67
Alias_symbol (synonym)TNL
Other alias
HGNC (Hugo) TRIM67
LocusID (NCBI) 440730
Atlas_Id 75179
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 231162928 and ends at 231221568 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GNPAT (1q42.2) / TRIM67 (1q42.2)LGALS8 (1q43) / TRIM67 (1q42.2)GNPAT TRIM67
LGALS8 TRIM67

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM67   31859
Cards
Entrez_Gene (NCBI)TRIM67  440730  tripartite motif containing 67
AliasesTNL
GeneCards (Weizmann)TRIM67
Ensembl hg19 (Hinxton)ENSG00000119283 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119283 [Gene_View]  chr1:231162928-231221568 [Contig_View]  TRIM67 [Vega]
ICGC DataPortalENSG00000119283
TCGA cBioPortalTRIM67
AceView (NCBI)TRIM67
Genatlas (Paris)TRIM67
WikiGenes440730
SOURCE (Princeton)TRIM67
Genetics Home Reference (NIH)TRIM67
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM67  -     chr1:231162928-231221568 +  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM67  -     1q42.2   [Description]    (hg19-Feb_2009)
EnsemblTRIM67 - 1q42.2 [CytoView hg19]  TRIM67 - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBITRIM67 [Mapview hg19]  TRIM67 [Mapview hg38]
OMIM610584   
Gene and transcription
Genbank (Entrez)AK055338 AK126782 AY253917 BC156316 BC157055
RefSeq transcript (Entrez)NM_001004342 NM_001300889
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM67
Cluster EST : UnigeneHs.655089 [ NCBI ]
CGAP (NCI)Hs.655089
Alternative Splicing GalleryENSG00000119283
Gene ExpressionTRIM67 [ NCBI-GEO ]   TRIM67 [ EBI - ARRAY_EXPRESS ]   TRIM67 [ SEEK ]   TRIM67 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM67 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440730
GTEX Portal (Tissue expression)TRIM67
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZTA4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZTA4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZTA4
Splice isoforms : SwissVarQ6ZTA4
PhosPhoSitePlusQ6ZTA4
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    COS (PS51262)    FN3 (PS50853)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)   
Domains : Interpro (EBI)B30.2/SPRY    Bbox_C    ConA-like_dom    COS_domain    FN3_dom    Ig-like_fold    SPRY_dom    Znf_B-box    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)fn3 (PF00041)    SPRY (PF00622)    zf-B_box (PF00643)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam00041    pfam00622    pfam00643    pfam00097   
Domain families : Smart (EMBL)BBC (SM00502)  BBOX (SM00336)  FN3 (SM00060)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM67
DMDM Disease mutations440730
Blocks (Seattle)TRIM67
SuperfamilyQ6ZTA4
Human Protein AtlasENSG00000119283
Peptide AtlasQ6ZTA4
HPRD15570
IPIIPI00641288   IPI00455477   IPI00939444   IPI00973020   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZTA4
IntAct (EBI)Q6ZTA4
FunCoupENSG00000119283
BioGRIDTRIM67
STRING (EMBL)TRIM67
ZODIACTRIM67
Ontologies - Pathways
QuickGOQ6ZTA4
Ontology : AmiGOcytoplasm  cytoskeleton  zinc ion binding  positive regulation of neuron projection development  negative regulation of Ras protein signal transduction  positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIcytoplasm  cytoskeleton  zinc ion binding  positive regulation of neuron projection development  negative regulation of Ras protein signal transduction  positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process  
NDEx NetworkTRIM67
Atlas of Cancer Signalling NetworkTRIM67
Wikipedia pathwaysTRIM67
Orthology - Evolution
OrthoDB440730
GeneTree (enSembl)ENSG00000119283
Phylogenetic Trees/Animal Genes : TreeFamTRIM67
HOVERGENQ6ZTA4
HOGENOMQ6ZTA4
Homologs : HomoloGeneTRIM67
Homology/Alignments : Family Browser (UCSC)TRIM67
Gene fusions - Rearrangements
Fusion: TCGAGNPAT TRIM67
Fusion: TCGALGALS8 TRIM67
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM67 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM67
dbVarTRIM67
ClinVarTRIM67
1000_GenomesTRIM67 
Exome Variant ServerTRIM67
ExAC (Exome Aggregation Consortium)TRIM67 (select the gene name)
Genetic variants : HAPMAP440730
Genomic Variants (DGV)TRIM67 [DGVbeta]
DECIPHERTRIM67 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM67 
Mutations
ICGC Data PortalTRIM67 
TCGA Data PortalTRIM67 
Broad Tumor PortalTRIM67
OASIS PortalTRIM67 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM67  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM67
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM67
DgiDB (Drug Gene Interaction Database)TRIM67
DoCM (Curated mutations)TRIM67 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM67 (select a term)
intoGenTRIM67
Cancer3DTRIM67(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610584   
Orphanet
MedgenTRIM67
Genetic Testing Registry TRIM67
NextProtQ6ZTA4 [Medical]
TSGene440730
GENETestsTRIM67
Target ValidationTRIM67
Huge Navigator TRIM67 [HugePedia]
snp3D : Map Gene to Disease440730
BioCentury BCIQTRIM67
ClinGenTRIM67
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440730
Chemical/Pharm GKB GenePA134947738
Clinical trialTRIM67
Miscellaneous
canSAR (ICR)TRIM67 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM67
EVEXTRIM67
GoPubMedTRIM67
iHOPTRIM67
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:35 CEST 2017

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