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TRIM7 (tripartite motif containing 7)

Identity

Alias_namestripartite motif-containing 7
Alias_symbol (synonym)RNF90
GNIP
Other alias
HGNC (Hugo) TRIM7
LocusID (NCBI) 81786
Atlas_Id 75182
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 181203121 and ends at 181205293 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM7   16278
Cards
Entrez_Gene (NCBI)TRIM7  81786  tripartite motif containing 7
AliasesGNIP; RNF90
GeneCards (Weizmann)TRIM7
Ensembl hg19 (Hinxton)ENSG00000146054 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146054 [Gene_View]  chr5:181203121-181205293 [Contig_View]  TRIM7 [Vega]
ICGC DataPortalENSG00000146054
TCGA cBioPortalTRIM7
AceView (NCBI)TRIM7
Genatlas (Paris)TRIM7
WikiGenes81786
SOURCE (Princeton)TRIM7
Genetics Home Reference (NIH)TRIM7
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM7  -     chr5:181203121-181205293 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM7  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM7 - 5q35.3 [CytoView hg19]  TRIM7 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBITRIM7 [Mapview hg19]  TRIM7 [Mapview hg38]
OMIM609315   
Gene and transcription
Genbank (Entrez)AF220032 AF396651 AF396652 AF396653 AF396654
RefSeq transcript (Entrez)NM_033342 NM_203293 NM_203294 NM_203295 NM_203296 NM_203297
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM7
Cluster EST : UnigeneHs.487412 [ NCBI ]
CGAP (NCI)Hs.487412
Alternative Splicing GalleryENSG00000146054
Gene ExpressionTRIM7 [ NCBI-GEO ]   TRIM7 [ EBI - ARRAY_EXPRESS ]   TRIM7 [ SEEK ]   TRIM7 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81786
GTEX Portal (Tissue expression)TRIM7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C029   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C029  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C029
Splice isoforms : SwissVarQ9C029
PhosPhoSitePlusQ9C029
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_B-box    Znf_B-box_chordata    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM7
DMDM Disease mutations81786
Blocks (Seattle)TRIM7
SuperfamilyQ9C029
Human Protein AtlasENSG00000146054
Peptide AtlasQ9C029
HPRD11648
IPIIPI00001233   IPI00386829   IPI00394688   IPI00386827   
Protein Interaction databases
DIP (DOE-UCLA)Q9C029
IntAct (EBI)Q9C029
FunCoupENSG00000146054
BioGRIDTRIM7
STRING (EMBL)TRIM7
ZODIACTRIM7
Ontologies - Pathways
QuickGOQ9C029
Ontology : AmiGOprotein binding  nucleus  cytoplasm  zinc ion binding  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  zinc ion binding  
NDEx NetworkTRIM7
Atlas of Cancer Signalling NetworkTRIM7
Wikipedia pathwaysTRIM7
Orthology - Evolution
OrthoDB81786
GeneTree (enSembl)ENSG00000146054
Phylogenetic Trees/Animal Genes : TreeFamTRIM7
HOVERGENQ9C029
HOGENOMQ9C029
Homologs : HomoloGeneTRIM7
Homology/Alignments : Family Browser (UCSC)TRIM7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM7
dbVarTRIM7
ClinVarTRIM7
1000_GenomesTRIM7 
Exome Variant ServerTRIM7
ExAC (Exome Aggregation Consortium)TRIM7 (select the gene name)
Genetic variants : HAPMAP81786
Genomic Variants (DGV)TRIM7 [DGVbeta]
DECIPHERTRIM7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM7 
Mutations
ICGC Data PortalTRIM7 
TCGA Data PortalTRIM7 
Broad Tumor PortalTRIM7
OASIS PortalTRIM7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM7
DgiDB (Drug Gene Interaction Database)TRIM7
DoCM (Curated mutations)TRIM7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM7 (select a term)
intoGenTRIM7
Cancer3DTRIM7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609315   
Orphanet
MedgenTRIM7
Genetic Testing Registry TRIM7
NextProtQ9C029 [Medical]
TSGene81786
GENETestsTRIM7
Target ValidationTRIM7
Huge Navigator TRIM7 [HugePedia]
snp3D : Map Gene to Disease81786
BioCentury BCIQTRIM7
ClinGenTRIM7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81786
Chemical/Pharm GKB GenePA38398
Clinical trialTRIM7
Miscellaneous
canSAR (ICR)TRIM7 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM7
EVEXTRIM7
GoPubMedTRIM7
iHOPTRIM7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:36 CEST 2017

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