Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM71 (tripartite motif containing 71)

Identity

Alias_namestripartite motif containing 71
Alias_symbol (synonym)LIN41
LIN-41
Other alias
HGNC (Hugo) TRIM71
LocusID (NCBI) 131405
Atlas_Id 53250
Location 3p22.3  [Link to chromosome band 3p22]
Location_base_pair Starts at 32818018 and ends at 32897826 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM71   32669
Cards
Entrez_Gene (NCBI)TRIM71  131405  tripartite motif containing 71
AliasesLIN-41; LIN41
GeneCards (Weizmann)TRIM71
Ensembl hg19 (Hinxton)ENSG00000206557 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206557 [Gene_View]  chr3:32818018-32897826 [Contig_View]  TRIM71 [Vega]
ICGC DataPortalENSG00000206557
TCGA cBioPortalTRIM71
AceView (NCBI)TRIM71
Genatlas (Paris)TRIM71
WikiGenes131405
SOURCE (Princeton)TRIM71
Genetics Home Reference (NIH)TRIM71
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM71  -     chr3:32818018-32897826 +  3p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM71  -     3p22.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM71 - 3p22.3 [CytoView hg19]  TRIM71 - 3p22.3 [CytoView hg38]
Mapping of homologs : NCBITRIM71 [Mapview hg19]  TRIM71 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW196612 BC156152 BC157052 DQ232881
RefSeq transcript (Entrez)NM_001039111
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM71
Cluster EST : UnigeneHs.567678 [ NCBI ]
CGAP (NCI)Hs.567678
Alternative Splicing GalleryENSG00000206557
Gene ExpressionTRIM71 [ NCBI-GEO ]   TRIM71 [ EBI - ARRAY_EXPRESS ]   TRIM71 [ SEEK ]   TRIM71 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131405
GTEX Portal (Tissue expression)TRIM71
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2Q1W2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2Q1W2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2Q1W2
Splice isoforms : SwissVarQ2Q1W2
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ2Q1W2
Domaine pattern : Prosite (Expaxy)FILAMIN_REPEAT (PS50194)    NHL (PS51125)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    Filamin/ABP280_repeat-like    Filamin/ABP280_rpt    Ig-like_fold    Ig_E-set    NHL_repeat    NHL_repeat_subgr    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)Filamin (PF00630)    NHL (PF01436)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00630    pfam01436    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  IG_FLMN (SM00557)  RING (SM00184)  
Conserved Domain (NCBI)TRIM71
DMDM Disease mutations131405
Blocks (Seattle)TRIM71
SuperfamilyQ2Q1W2
Human Protein AtlasENSG00000206557
Peptide AtlasQ2Q1W2
IPIIPI00719053   
Protein Interaction databases
DIP (DOE-UCLA)Q2Q1W2
IntAct (EBI)Q2Q1W2
FunCoupENSG00000206557
BioGRIDTRIM71
STRING (EMBL)TRIM71
ZODIACTRIM71
Ontologies - Pathways
QuickGOQ2Q1W2
Ontology : AmiGOG1/S transition of mitotic cell cycle  P-body  neural tube closure  ubiquitin-protein transferase activity  zinc ion binding  fibroblast growth factor receptor signaling pathway  miRNA metabolic process  negative regulation of translation  neural tube development  translation repressor activity  miRNA binding  miRNA mediated inhibition of translation  protein autoubiquitination  regulation of gene silencing by miRNA  3'-UTR-mediated mRNA destabilization  ubiquitin protein ligase activity  stem cell proliferation  regulation of neural precursor cell proliferation  positive regulation of gene silencing by miRNA  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  P-body  neural tube closure  ubiquitin-protein transferase activity  zinc ion binding  fibroblast growth factor receptor signaling pathway  miRNA metabolic process  negative regulation of translation  neural tube development  translation repressor activity  miRNA binding  miRNA mediated inhibition of translation  protein autoubiquitination  regulation of gene silencing by miRNA  3'-UTR-mediated mRNA destabilization  ubiquitin protein ligase activity  stem cell proliferation  regulation of neural precursor cell proliferation  positive regulation of gene silencing by miRNA  
Pathways : KEGGMicroRNAs in cancer   
NDEx NetworkTRIM71
Atlas of Cancer Signalling NetworkTRIM71
Wikipedia pathwaysTRIM71
Orthology - Evolution
OrthoDB131405
GeneTree (enSembl)ENSG00000206557
Phylogenetic Trees/Animal Genes : TreeFamTRIM71
HOVERGENQ2Q1W2
HOGENOMQ2Q1W2
Homologs : HomoloGeneTRIM71
Homology/Alignments : Family Browser (UCSC)TRIM71
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM71
dbVarTRIM71
ClinVarTRIM71
1000_GenomesTRIM71 
Exome Variant ServerTRIM71
ExAC (Exome Aggregation Consortium)TRIM71 (select the gene name)
Genetic variants : HAPMAP131405
Genomic Variants (DGV)TRIM71 [DGVbeta]
DECIPHERTRIM71 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM71 
Mutations
ICGC Data PortalTRIM71 
TCGA Data PortalTRIM71 
Broad Tumor PortalTRIM71
OASIS PortalTRIM71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM71
DgiDB (Drug Gene Interaction Database)TRIM71
DoCM (Curated mutations)TRIM71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM71 (select a term)
intoGenTRIM71
Cancer3DTRIM71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM71
Genetic Testing Registry TRIM71
NextProtQ2Q1W2 [Medical]
TSGene131405
GENETestsTRIM71
Target ValidationTRIM71
Huge Navigator TRIM71 [HugePedia]
snp3D : Map Gene to Disease131405
BioCentury BCIQTRIM71
ClinGenTRIM71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131405
Chemical/Pharm GKB GenePA144596246
Clinical trialTRIM71
Miscellaneous
canSAR (ICR)TRIM71 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM71
EVEXTRIM71
GoPubMedTRIM71
iHOPTRIM71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 14:10:32 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.