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TRIM71 (tripartite motif containing 71)

Identity

Alias (NCBI)HYDCC1
LIN-41
LIN41
HGNC (Hugo) TRIM71
HGNC Alias symbLIN41
LIN-41
HGNC Previous nametripartite motif containing 71, E3 ubiquitin protein ligase
LocusID (NCBI) 131405
Atlas_Id 53250
Location 3p22.3  [Link to chromosome band 3p22]
Location_base_pair Starts at 32817997 and ends at 32897824 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM71   32669
Cards
Entrez_Gene (NCBI)TRIM71    tripartite motif containing 71
AliasesHYDCC1; LIN-41; LIN41
GeneCards (Weizmann)TRIM71
Ensembl hg19 (Hinxton)ENSG00000206557 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206557 [Gene_View]  ENSG00000206557 [Sequence]  chr3:32817997-32897824 [Contig_View]  TRIM71 [Vega]
ICGC DataPortalENSG00000206557
TCGA cBioPortalTRIM71
AceView (NCBI)TRIM71
Genatlas (Paris)TRIM71
SOURCE (Princeton)TRIM71
Genetics Home Reference (NIH)TRIM71
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM71  -     chr3:32817997-32897824 +  3p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM71  -     3p22.3   [Description]    (hg19-Feb_2009)
GoldenPathTRIM71 - 3p22.3 [CytoView hg19]  TRIM71 - 3p22.3 [CytoView hg38]
ImmunoBaseENSG00000206557
Genome Data Viewer NCBITRIM71 [Mapview hg19]  
OMIM618570   618667   
Gene and transcription
Genbank (Entrez)AW196612 DQ232881
RefSeq transcript (Entrez)NM_001039111
Consensus coding sequences : CCDS (NCBI)TRIM71
Gene ExpressionTRIM71 [ NCBI-GEO ]   TRIM71 [ EBI - ARRAY_EXPRESS ]   TRIM71 [ SEEK ]   TRIM71 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM71 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM71 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131405
GTEX Portal (Tissue expression)TRIM71
Human Protein AtlasENSG00000206557-TRIM71 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2Q1W2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2Q1W2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2Q1W2
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ2Q1W2
Domaine pattern : Prosite (Expaxy)FILAMIN_REPEAT (PS50194)    NHL (PS51125)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    Filamin/ABP280_repeat-like    Filamin/ABP280_rpt    Ig-like_fold    Ig_E-set    NHL_repeat    NHL_repeat_subgr    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)Filamin (PF00630)    NHL (PF01436)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00630    pfam01436    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  IG_FLMN (SM00557)  RING (SM00184)  
Conserved Domain (NCBI)TRIM71
SuperfamilyQ2Q1W2
AlphaFold pdb e-kbQ2Q1W2   
Human Protein Atlas [tissue]ENSG00000206557-TRIM71 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q2Q1W2
IntAct (EBI)Q2Q1W2
BioGRIDTRIM71
STRING (EMBL)TRIM71
ZODIACTRIM71
Ontologies - Pathways
QuickGOQ2Q1W2
Ontology : AmiGOG1/S transition of mitotic cell cycle  protein polyubiquitination  P-body  P-body  neural tube closure  ubiquitin-protein transferase activity  protein binding  zinc ion binding  fibroblast growth factor receptor signaling pathway  miRNA metabolic process  posttranscriptional regulation of gene expression  negative regulation of translation  negative regulation of translation  neural tube development  translation repressor activity  translation repressor activity  production of miRNAs involved in gene silencing by miRNA  miRNA binding  miRNA binding  miRNA mediated inhibition of translation  proteasome-mediated ubiquitin-dependent protein catabolic process  protein autoubiquitination  regulation of gene silencing by miRNA  3'-UTR-mediated mRNA destabilization  ubiquitin protein ligase activity  stem cell proliferation  regulation of neural precursor cell proliferation  positive regulation of gene silencing by miRNA  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  protein polyubiquitination  P-body  P-body  neural tube closure  ubiquitin-protein transferase activity  protein binding  zinc ion binding  fibroblast growth factor receptor signaling pathway  miRNA metabolic process  posttranscriptional regulation of gene expression  negative regulation of translation  negative regulation of translation  neural tube development  translation repressor activity  translation repressor activity  production of miRNAs involved in gene silencing by miRNA  miRNA binding  miRNA binding  miRNA mediated inhibition of translation  proteasome-mediated ubiquitin-dependent protein catabolic process  protein autoubiquitination  regulation of gene silencing by miRNA  3'-UTR-mediated mRNA destabilization  ubiquitin protein ligase activity  stem cell proliferation  regulation of neural precursor cell proliferation  positive regulation of gene silencing by miRNA  
Pathways : KEGGMicroRNAs in cancer   
NDEx NetworkTRIM71
Atlas of Cancer Signalling NetworkTRIM71
Wikipedia pathwaysTRIM71
Orthology - Evolution
OrthoDB131405
GeneTree (enSembl)ENSG00000206557
Phylogenetic Trees/Animal Genes : TreeFamTRIM71
Homologs : HomoloGeneTRIM71
Homology/Alignments : Family Browser (UCSC)TRIM71
Gene fusions - Rearrangements
Fusion : QuiverTRIM71
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM71
dbVarTRIM71
ClinVarTRIM71
MonarchTRIM71
1000_GenomesTRIM71 
Exome Variant ServerTRIM71
GNOMAD BrowserENSG00000206557
Varsome BrowserTRIM71
ACMGTRIM71 variants
VarityQ2Q1W2
Genomic Variants (DGV)TRIM71 [DGVbeta]
DECIPHERTRIM71 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM71 
Mutations
ICGC Data PortalTRIM71 
TCGA Data PortalTRIM71 
Broad Tumor PortalTRIM71
OASIS PortalTRIM71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM71  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM71
Mutations and Diseases : HGMDTRIM71
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM71
DgiDB (Drug Gene Interaction Database)TRIM71
DoCM (Curated mutations)TRIM71
CIViC (Clinical Interpretations of Variants in Cancer)TRIM71
Cancer3DTRIM71
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618570    618667   
Orphanet
DisGeNETTRIM71
MedgenTRIM71
Genetic Testing Registry TRIM71
NextProtQ2Q1W2 [Medical]
GENETestsTRIM71
Target ValidationTRIM71
Huge Navigator TRIM71 [HugePedia]
ClinGenTRIM71
Clinical trials, drugs, therapy
MyCancerGenomeTRIM71
Protein Interactions : CTDTRIM71
Pharm GKB GenePA144596246
PharosQ2Q1W2
Clinical trialTRIM71
Miscellaneous
canSAR (ICR)TRIM71
HarmonizomeTRIM71
DataMed IndexTRIM71
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:25 CEST 2021

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