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TRIM73 (tripartite motif containing 73)

Identity

Alias_namesTRIM50B
tripartite motif-containing 50B
tripartite motif-containing 73
Other alias
HGNC (Hugo) TRIM73
LocusID (NCBI) 375593
Atlas_Id 75183
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 72959477 and ends at 72969466 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM73   18162
Cards
Entrez_Gene (NCBI)TRIM73  375593  tripartite motif containing 73
AliasesTRIM50B
GeneCards (Weizmann)TRIM73
Ensembl hg19 (Hinxton)ENSG00000178809 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178809 [Gene_View]  chr7:72959477-72969466 [Contig_View]  TRIM73 [Vega]
ICGC DataPortalENSG00000178809
TCGA cBioPortalTRIM73
AceView (NCBI)TRIM73
Genatlas (Paris)TRIM73
WikiGenes375593
SOURCE (Princeton)TRIM73
Genetics Home Reference (NIH)TRIM73
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM73  -     chr7:72959477-72969466 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM73  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblTRIM73 - 7q11.23 [CytoView hg19]  TRIM73 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBITRIM73 [Mapview hg19]  TRIM73 [Mapview hg38]
OMIM612549   
Gene and transcription
Genbank (Entrez)AF498998 AK094396 AK126632 BC073926 BC152800
RefSeq transcript (Entrez)NM_198924
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM73
Cluster EST : UnigeneHs.645328 [ NCBI ]
CGAP (NCI)Hs.645328
Alternative Splicing GalleryENSG00000178809
Gene ExpressionTRIM73 [ NCBI-GEO ]   TRIM73 [ EBI - ARRAY_EXPRESS ]   TRIM73 [ SEEK ]   TRIM73 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM73 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375593
GTEX Portal (Tissue expression)TRIM73
Human Protein AtlasENSG00000178809-TRIM73 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UV7
Splice isoforms : SwissVarQ86UV7
PhosPhoSitePlusQ86UV7
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf-RING_LisH    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam00643    pfam13445   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM73
DMDM Disease mutations375593
Blocks (Seattle)TRIM73
SuperfamilyQ86UV7
Human Protein Atlas [tissue]ENSG00000178809-TRIM73 [tissue]
Peptide AtlasQ86UV7
HPRD18606
IPIIPI00328817   IPI00927134   IPI00921249   
Protein Interaction databases
DIP (DOE-UCLA)Q86UV7
IntAct (EBI)Q86UV7
FunCoupENSG00000178809
BioGRIDTRIM73
STRING (EMBL)TRIM73
ZODIACTRIM73
Ontologies - Pathways
QuickGOQ86UV7
Ontology : AmiGOcytosol  zinc ion binding  
Ontology : EGO-EBIcytosol  zinc ion binding  
NDEx NetworkTRIM73
Atlas of Cancer Signalling NetworkTRIM73
Wikipedia pathwaysTRIM73
Orthology - Evolution
OrthoDB375593
GeneTree (enSembl)ENSG00000178809
Phylogenetic Trees/Animal Genes : TreeFamTRIM73
HOVERGENQ86UV7
HOGENOMQ86UV7
Homologs : HomoloGeneTRIM73
Homology/Alignments : Family Browser (UCSC)TRIM73
Gene fusions - Rearrangements
Fusion: Tumor Portal TRIM73
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM73 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM73
dbVarTRIM73
ClinVarTRIM73
1000_GenomesTRIM73 
Exome Variant ServerTRIM73
ExAC (Exome Aggregation Consortium)ENSG00000178809
GNOMAD BrowserENSG00000178809
Genetic variants : HAPMAP375593
Genomic Variants (DGV)TRIM73 [DGVbeta]
DECIPHERTRIM73 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM73 
Mutations
ICGC Data PortalTRIM73 
TCGA Data PortalTRIM73 
Broad Tumor PortalTRIM73
OASIS PortalTRIM73 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM73  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM73
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM73
DgiDB (Drug Gene Interaction Database)TRIM73
DoCM (Curated mutations)TRIM73 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM73 (select a term)
intoGenTRIM73
Cancer3DTRIM73(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612549   
Orphanet
MedgenTRIM73
Genetic Testing Registry TRIM73
NextProtQ86UV7 [Medical]
TSGene375593
GENETestsTRIM73
Target ValidationTRIM73
Huge Navigator TRIM73 [HugePedia]
snp3D : Map Gene to Disease375593
BioCentury BCIQTRIM73
ClinGenTRIM73
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375593
Chemical/Pharm GKB GenePA38510
Clinical trialTRIM73
Miscellaneous
canSAR (ICR)TRIM73 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM73
EVEXTRIM73
GoPubMedTRIM73
iHOPTRIM73
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:34:04 CET 2017

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