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TRIM74 (tripartite motif containing 74)

Identity

Alias_namesTRIM50C
tripartite motif-containing 50C
tripartite motif-containing 74
Alias_symbol (synonym)MGC45440
Other alias
HGNC (Hugo) TRIM74
LocusID (NCBI) 378108
Atlas_Id 75184
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 75024903 and ends at 75034888 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM74   17453
Cards
Entrez_Gene (NCBI)TRIM74  378108  tripartite motif containing 74
AliasesTRIM50C
GeneCards (Weizmann)TRIM74
Ensembl hg19 (Hinxton)ENSG00000155428 [Gene_View]  chr7:75024903-75034888 [Contig_View]  TRIM74 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155428 [Gene_View]  chr7:75024903-75034888 [Contig_View]  TRIM74 [Vega]
ICGC DataPortalENSG00000155428
TCGA cBioPortalTRIM74
AceView (NCBI)TRIM74
Genatlas (Paris)TRIM74
WikiGenes378108
SOURCE (Princeton)TRIM74
Genetics Home Reference (NIH)TRIM74
Genomic and cartography
GoldenPath hg19 (UCSC)TRIM74  -     chr7:75024903-75034888 +  7q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRIM74  -     7q11.23   [Description]    (hg38-Dec_2013)
EnsemblTRIM74 - 7q11.23 [CytoView hg19]  TRIM74 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBITRIM74 [Mapview hg19]  TRIM74 [Mapview hg38]
OMIM612550   
Gene and transcription
Genbank (Entrez)AF498999 BC033871 DQ890814 DQ893970
RefSeq transcript (Entrez)NM_198853
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)TRIM74
Cluster EST : UnigeneHs.645328 [ NCBI ]
CGAP (NCI)Hs.645328
Alternative Splicing GalleryENSG00000155428
Gene ExpressionTRIM74 [ NCBI-GEO ]   TRIM74 [ EBI - ARRAY_EXPRESS ]   TRIM74 [ SEEK ]   TRIM74 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM74 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)378108
GTEX Portal (Tissue expression)TRIM74
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UV6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UV6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UV6
Splice isoforms : SwissVarQ86UV6
PhosPhoSitePlusQ86UV6
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_B-box    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)zf-B_box (PF00643)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam00643    pfam00097   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM74
DMDM Disease mutations378108
Blocks (Seattle)TRIM74
SuperfamilyQ86UV6
Human Protein AtlasENSG00000155428
Peptide AtlasQ86UV6
HPRD15567
IPIIPI00328816   IPI00789257   
Protein Interaction databases
DIP (DOE-UCLA)Q86UV6
IntAct (EBI)Q86UV6
FunCoupENSG00000155428
BioGRIDTRIM74
STRING (EMBL)TRIM74
ZODIACTRIM74
Ontologies - Pathways
QuickGOQ86UV6
Ontology : AmiGOprotein binding  intracellular  zinc ion binding  
Ontology : EGO-EBIprotein binding  intracellular  zinc ion binding  
NDEx NetworkTRIM74
Atlas of Cancer Signalling NetworkTRIM74
Wikipedia pathwaysTRIM74
Orthology - Evolution
OrthoDB378108
GeneTree (enSembl)ENSG00000155428
Phylogenetic Trees/Animal Genes : TreeFamTRIM74
HOVERGENQ86UV6
HOGENOMQ86UV6
Homologs : HomoloGeneTRIM74
Homology/Alignments : Family Browser (UCSC)TRIM74
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM74 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM74
dbVarTRIM74
ClinVarTRIM74
1000_GenomesTRIM74 
Exome Variant ServerTRIM74
ExAC (Exome Aggregation Consortium)TRIM74 (select the gene name)
Genetic variants : HAPMAP378108
Genomic Variants (DGV)TRIM74 [DGVbeta]
DECIPHER (Syndromes)7:75024903-75034888  ENSG00000155428
CONAN: Copy Number AnalysisTRIM74 
Mutations
ICGC Data PortalTRIM74 
TCGA Data PortalTRIM74 
Broad Tumor PortalTRIM74
OASIS PortalTRIM74 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM74  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM74
BioMutasearch TRIM74
DgiDB (Drug Gene Interaction Database)TRIM74
DoCM (Curated mutations)TRIM74 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM74 (select a term)
intoGenTRIM74
Cancer3DTRIM74(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612550   
Orphanet
MedgenTRIM74
Genetic Testing Registry TRIM74
NextProtQ86UV6 [Medical]
TSGene378108
GENETestsTRIM74
Huge Navigator TRIM74 [HugePedia]
snp3D : Map Gene to Disease378108
BioCentury BCIQTRIM74
ClinGenTRIM74
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378108
Chemical/Pharm GKB GenePA38454
Clinical trialTRIM74
Miscellaneous
canSAR (ICR)TRIM74 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM74
EVEXTRIM74
GoPubMedTRIM74
iHOPTRIM74
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:48 CET 2017

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