Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM77 (tripartite motif containing 77)

Identity

Alias (NCBI)TRIM77P
HGNC (Hugo) TRIM77
HGNC Previous nameTRIM77P
HGNC Previous nametripartite motif-containing 77
 tripartite motif containing 77, pseudogene
LocusID (NCBI) 390231
Atlas_Id 75185
Location 11q14.3  [Link to chromosome band 11q14]
Location_base_pair Starts at 89710299 and ends at 89717872 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
P4HA1 (10q22.1) / TRIM77 (11q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(10;11)(q22;q14) P4HA1/TRIM77

External links

Nomenclature
HGNC (Hugo)TRIM77   34228
Cards
Entrez_Gene (NCBI)TRIM77    tripartite motif containing 77
AliasesTRIM77P
GeneCards (Weizmann)TRIM77
Ensembl hg19 (Hinxton)ENSG00000214414 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214414 [Gene_View]  ENSG00000214414 [Sequence]  chr11:89710299-89717872 [Contig_View]  TRIM77 [Vega]
ICGC DataPortalENSG00000214414
TCGA cBioPortalTRIM77
AceView (NCBI)TRIM77
Genatlas (Paris)TRIM77
SOURCE (Princeton)TRIM77
Genetics Home Reference (NIH)TRIM77
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM77  -     chr11:89710299-89717872 +  11q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM77  -     11q14.3   [Description]    (hg19-Feb_2009)
GoldenPathTRIM77 - 11q14.3 [CytoView hg19]  TRIM77 - 11q14.3 [CytoView hg38]
ImmunoBaseENSG00000214414
genome Data Viewer NCBITRIM77 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)JF968445 JF968446
RefSeq transcript (Entrez)NM_001146162 NM_001271942
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM77
Alternative Splicing GalleryENSG00000214414
Gene ExpressionTRIM77 [ NCBI-GEO ]   TRIM77 [ EBI - ARRAY_EXPRESS ]   TRIM77 [ SEEK ]   TRIM77 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM77 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM77 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390231
GTEX Portal (Tissue expression)TRIM77
Human Protein AtlasENSG00000214414-TRIM77 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtI1YAP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtI1YAP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProI1YAP6
Splice isoforms : SwissVarI1YAP6
PhosPhoSitePlusI1YAP6
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin_SPRY    ConA-like_dom_sf    SPRY_dom    Znf_B-box    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam00622    pfam00097   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM77
Blocks (Seattle)TRIM77
SuperfamilyI1YAP6
Human Protein Atlas [tissue]ENSG00000214414-TRIM77 [tissue]
Peptide AtlasI1YAP6
IPIIPI00399326   
Protein Interaction databases
DIP (DOE-UCLA)I1YAP6
IntAct (EBI)I1YAP6
BioGRIDTRIM77
STRING (EMBL)TRIM77
ZODIACTRIM77
Ontologies - Pathways
QuickGOI1YAP6
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkTRIM77
Atlas of Cancer Signalling NetworkTRIM77
Wikipedia pathwaysTRIM77
Orthology - Evolution
OrthoDB390231
GeneTree (enSembl)ENSG00000214414
Phylogenetic Trees/Animal Genes : TreeFamTRIM77
HOGENOMI1YAP6
Homologs : HomoloGeneTRIM77
Homology/Alignments : Family Browser (UCSC)TRIM77
Gene fusions - Rearrangements
Fusion : QuiverTRIM77
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM77 [hg38]
dbVarTRIM77
ClinVarTRIM77
MonarchTRIM77
1000_GenomesTRIM77 
Exome Variant ServerTRIM77
GNOMAD BrowserENSG00000214414
Varsome BrowserTRIM77
Genomic Variants (DGV)TRIM77 [DGVbeta]
DECIPHERTRIM77 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM77 
Mutations
ICGC Data PortalTRIM77 
TCGA Data PortalTRIM77 
Broad Tumor PortalTRIM77
OASIS PortalTRIM77 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM77  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM77
Mutations and Diseases : HGMDTRIM77
BioMutasearch TRIM77
DgiDB (Drug Gene Interaction Database)TRIM77
DoCM (Curated mutations)TRIM77 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM77 (select a term)
intoGenTRIM77
Cancer3DTRIM77(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRIM77
MedgenTRIM77
Genetic Testing Registry TRIM77
NextProtI1YAP6 [Medical]
GENETestsTRIM77
Target ValidationTRIM77
Huge Navigator TRIM77 [HugePedia]
ClinGenTRIM77
Clinical trials, drugs, therapy
MyCancerGenomeTRIM77
Protein Interactions : CTD
Pharm GKB GenePA162407029
Clinical trialTRIM77
Miscellaneous
canSAR (ICR)TRIM77 (select the gene name)
HarmonizomeTRIM77
DataMed IndexTRIM77
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM77
EVEXTRIM77
GoPubMedTRIM77
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:33:16 CET 2020
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.