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TRIM77 (tripartite motif containing 77)

Identity

Alias_namesTRIM77P
tripartite motif-containing 77
tripartite motif containing 77, pseudogene
Other alias
HGNC (Hugo) TRIM77
LocusID (NCBI) 390231
Atlas_Id 75185
Location 11q14.3  [Link to chromosome band 11q14]
Location_base_pair Starts at 89443467 and ends at 89451040 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
P4HA1 (10q22.1) / TRIM77 (11q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM77   34228
Cards
Entrez_Gene (NCBI)TRIM77  390231  tripartite motif containing 77
AliasesTRIM77P
GeneCards (Weizmann)TRIM77
Ensembl hg19 (Hinxton)ENSG00000214414 [Gene_View]  chr11:89443467-89451040 [Contig_View]  TRIM77 [Vega]
Ensembl hg38 (Hinxton)ENSG00000214414 [Gene_View]  chr11:89443467-89451040 [Contig_View]  TRIM77 [Vega]
ICGC DataPortalENSG00000214414
TCGA cBioPortalTRIM77
AceView (NCBI)TRIM77
Genatlas (Paris)TRIM77
WikiGenes390231
SOURCE (Princeton)TRIM77
Genetics Home Reference (NIH)TRIM77
Genomic and cartography
GoldenPath hg19 (UCSC)TRIM77  -     chr11:89443467-89451040 +  11q14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRIM77  -     11q14.3   [Description]    (hg38-Dec_2013)
EnsemblTRIM77 - 11q14.3 [CytoView hg19]  TRIM77 - 11q14.3 [CytoView hg38]
Mapping of homologs : NCBITRIM77 [Mapview hg19]  TRIM77 [Mapview hg38]
Gene and transcription
Genbank (Entrez)JF968445 JF968446
RefSeq transcript (Entrez)NM_001146162 NM_001271942
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929380
Consensus coding sequences : CCDS (NCBI)TRIM77
Cluster EST : UnigeneHs.723112 [ NCBI ]
CGAP (NCI)Hs.723112
Alternative Splicing GalleryENSG00000214414
Gene ExpressionTRIM77 [ NCBI-GEO ]   TRIM77 [ EBI - ARRAY_EXPRESS ]   TRIM77 [ SEEK ]   TRIM77 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM77 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390231
GTEX Portal (Tissue expression)TRIM77
Protein : pattern, domain, 3D structure
UniProt/SwissProtI1YAP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtI1YAP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProI1YAP6
Splice isoforms : SwissVarI1YAP6
PhosPhoSitePlusI1YAP6
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    SPRY_dom    Znf_B-box    Znf_C3HC4_RING-type    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-C3HC4 (PF00097)   
Domain families : Pfam (NCBI)pfam00622    pfam00097   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM77
DMDM Disease mutations390231
Blocks (Seattle)TRIM77
SuperfamilyI1YAP6
Human Protein AtlasENSG00000214414
Peptide AtlasI1YAP6
IPIIPI00399326   
Protein Interaction databases
DIP (DOE-UCLA)I1YAP6
IntAct (EBI)I1YAP6
FunCoupENSG00000214414
BioGRIDTRIM77
STRING (EMBL)TRIM77
ZODIACTRIM77
Ontologies - Pathways
QuickGOI1YAP6
Ontology : AmiGOintracellular  zinc ion binding  
Ontology : EGO-EBIintracellular  zinc ion binding  
NDEx NetworkTRIM77
Atlas of Cancer Signalling NetworkTRIM77
Wikipedia pathwaysTRIM77
Orthology - Evolution
OrthoDB390231
GeneTree (enSembl)ENSG00000214414
Phylogenetic Trees/Animal Genes : TreeFamTRIM77
HOVERGENI1YAP6
HOGENOMI1YAP6
Homologs : HomoloGeneTRIM77
Homology/Alignments : Family Browser (UCSC)TRIM77
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM77 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM77
dbVarTRIM77
ClinVarTRIM77
1000_GenomesTRIM77 
Exome Variant ServerTRIM77
ExAC (Exome Aggregation Consortium)TRIM77 (select the gene name)
Genetic variants : HAPMAP390231
Genomic Variants (DGV)TRIM77 [DGVbeta]
DECIPHER (Syndromes)11:89443467-89451040  ENSG00000214414
CONAN: Copy Number AnalysisTRIM77 
Mutations
ICGC Data PortalTRIM77 
TCGA Data PortalTRIM77 
Broad Tumor PortalTRIM77
OASIS PortalTRIM77 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRIM77
BioMutasearch TRIM77
DgiDB (Drug Gene Interaction Database)TRIM77
DoCM (Curated mutations)TRIM77 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM77 (select a term)
intoGenTRIM77
Cancer3DTRIM77(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM77
Genetic Testing Registry TRIM77
NextProtI1YAP6 [Medical]
TSGene390231
GENETestsTRIM77
Huge Navigator TRIM77 [HugePedia]
snp3D : Map Gene to Disease390231
BioCentury BCIQTRIM77
ClinGenTRIM77
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390231
Chemical/Pharm GKB GenePA162407029
Clinical trialTRIM77
Miscellaneous
canSAR (ICR)TRIM77 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM77
EVEXTRIM77
GoPubMedTRIM77
iHOPTRIM77
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:49 CET 2017

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