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TRIM8 (tripartite motif containing 8)

Identity

Other namesGERP
RNF27
HGNC (Hugo) TRIM8
LocusID (NCBI) 81603
Location 10q24.32
Location_base_pair Starts at 104404252 and ends at 104418076 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRIM8   15579
Cards
Entrez_Gene (NCBI)TRIM8  81603  tripartite motif containing 8
GeneCards (Weizmann)TRIM8
Ensembl (Hinxton)ENSG00000171206 [Gene_View]  chr10:104404252-104418076 [Contig_View]  TRIM8 [Vega]
ICGC DataPortalENSG00000171206
cBioPortalTRIM8
AceView (NCBI)TRIM8
Genatlas (Paris)TRIM8
WikiGenes81603
SOURCE (Princeton)NM_030912
Genomic and cartography
GoldenPath (UCSC)TRIM8  -  10q24.32   chr10:104404252-104418076 +  10q24.32   [Description]    (hg19-Feb_2009)
EnsemblTRIM8 - 10q24.32 [CytoView]
Mapping of homologs : NCBITRIM8 [Mapview]
OMIM606125   
Gene and transcription
Genbank (Entrez)AA907931 AF086326 AF220034 AF281046 AL360160
RefSeq transcript (Entrez)NM_030912
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NT_030059 NW_001838006 NW_004929376
Consensus coding sequences : CCDS (NCBI)TRIM8
Cluster EST : UnigeneHs.336810 [ NCBI ]
CGAP (NCI)Hs.336810
Alternative Splicing : Fast-db (Paris)GSHG0003651
Alternative Splicing GalleryENSG00000171206
Gene ExpressionTRIM8 [ NCBI-GEO ]     TRIM8 [ SEEK ]   TRIM8 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZR9 (Uniprot)
NextProtQ9BZR9  [Medical]
With graphics : InterProQ9BZR9
Splice isoforms : SwissVarQ9BZR9 (Swissvar)
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.-6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING [organisation]   Znf_RING/FYVE/PHD [organisation]   Znf_RING_CS [organisation]  
Related proteins : CluSTrQ9BZR9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RING (SM00184)  
DMDM Disease mutations81603
Blocks (Seattle)Q9BZR9
Human Protein AtlasENSG00000171206 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9BZR9
HPRD06934
IPIIPI00289207   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZR9
IntAct (EBI)Q9BZR9
FunCoupENSG00000171206
BioGRIDTRIM8
InParanoidQ9BZR9
Interologous Interaction database Q9BZR9
IntegromeDBTRIM8
STRING (EMBL)TRIM8
Ontologies - Pathways
Ontology : AmiGOnucleus  nucleolus  cytoplasm  biological_process  zinc ion binding  protein ubiquitination  PML body  ligase activity  identical protein binding  protein homodimerization activity  intracellular membrane-bounded organelle  
Ontology : EGO-EBInucleus  nucleolus  cytoplasm  biological_process  zinc ion binding  protein ubiquitination  PML body  ligase activity  identical protein binding  protein homodimerization activity  intracellular membrane-bounded organelle  
Protein Interaction DatabaseTRIM8
Wikipedia pathwaysTRIM8
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TRIM8
snp3D : Map Gene to Disease81603
SNP (GeneSNP Utah)TRIM8
SNP : HGBaseTRIM8
Genetic variants : HAPMAPTRIM8
Exome VariantTRIM8
1000_GenomesTRIM8 
ICGC programENSG00000171206 
Somatic Mutations in Cancer : COSMICTRIM8 
CONAN: Copy Number AnalysisTRIM8 
Mutations and Diseases : HGMDTRIM8
Genomic VariantsTRIM8  TRIM8 [DGVbeta]
dbVarTRIM8
ClinVarTRIM8
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM606125   
MedgenTRIM8
GENETestsTRIM8
Disease Genetic AssociationTRIM8
Huge Navigator TRIM8 [HugePedia]  TRIM8 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneTRIM8
Homology/Alignments : Family Browser (UCSC)TRIM8
Phylogenetic Trees/Animal Genes : TreeFamTRIM8
Chemical/Protein Interactions : CTD81603
Chemical/Pharm GKB GenePA37983
Clinical trialTRIM8
Cancer Resource (Charite)ENSG00000171206
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
CoreMineTRIM8
iHOPTRIM8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:24:09 CEST 2014

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