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TRIM9 (tripartite motif containing 9)

Identity

Alias_namestripartite motif-containing 9
Alias_symbol (synonym)SPRING
RNF91
Other alias
HGNC (Hugo) TRIM9
LocusID (NCBI) 114088
Atlas_Id 75187
Location 14q22.1  [Link to chromosome band 14q22]
Location_base_pair Starts at 50975263 and ends at 51095704 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NADSYN1 (11q13.4) / TRIM9 (14q22.1)PYGL (14q22.1) / TRIM9 (14q22.1)TRIM9 (14q22.1) / DNAJA2 (16q11.2)
NADSYN1 TRIM9PYGL TRIM9

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM9   16288
Cards
Entrez_Gene (NCBI)TRIM9  114088  tripartite motif containing 9
AliasesRNF91; SPRING
GeneCards (Weizmann)TRIM9
Ensembl hg19 (Hinxton)ENSG00000100505 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100505 [Gene_View]  chr14:50975263-51095704 [Contig_View]  TRIM9 [Vega]
ICGC DataPortalENSG00000100505
TCGA cBioPortalTRIM9
AceView (NCBI)TRIM9
Genatlas (Paris)TRIM9
WikiGenes114088
SOURCE (Princeton)TRIM9
Genetics Home Reference (NIH)TRIM9
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM9  -     chr14:50975263-51095704 -  14q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM9  -     14q22.1   [Description]    (hg19-Feb_2009)
EnsemblTRIM9 - 14q22.1 [CytoView hg19]  TRIM9 - 14q22.1 [CytoView hg38]
Mapping of homologs : NCBITRIM9 [Mapview hg19]  TRIM9 [Mapview hg38]
OMIM606555   
Gene and transcription
Genbank (Entrez)AK054781 AK055388 BC013414 BC063872 BF966522
RefSeq transcript (Entrez)NM_015163 NM_052978
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM9
Cluster EST : UnigeneHs.654750 [ NCBI ]
CGAP (NCI)Hs.654750
Alternative Splicing GalleryENSG00000100505
Gene ExpressionTRIM9 [ NCBI-GEO ]   TRIM9 [ EBI - ARRAY_EXPRESS ]   TRIM9 [ SEEK ]   TRIM9 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114088
GTEX Portal (Tissue expression)TRIM9
Human Protein AtlasENSG00000100505-TRIM9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C026   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C026  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C026
Splice isoforms : SwissVarQ9C026
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ9C026
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    COS (PS51262)    FN3 (PS50853)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Bbox_C    ConA-like_dom    COS_domain    FN3_dom    Ig-like_fold    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)fn3 (PF00041)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00041    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBC (SM00502)  BBOX (SM00336)  FN3 (SM00060)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM9
DMDM Disease mutations114088
Blocks (Seattle)TRIM9
PDB (SRS)2DB8   
PDB (PDBSum)2DB8   
PDB (IMB)2DB8   
PDB (RSDB)2DB8   
Structural Biology KnowledgeBase2DB8   
SCOP (Structural Classification of Proteins)2DB8   
CATH (Classification of proteins structures)2DB8   
SuperfamilyQ9C026
Human Protein Atlas [tissue]ENSG00000100505-TRIM9 [tissue]
Peptide AtlasQ9C026
HPRD05947
IPIIPI00026828   IPI00102679   IPI00337362   
Protein Interaction databases
DIP (DOE-UCLA)Q9C026
IntAct (EBI)Q9C026
FunCoupENSG00000100505
BioGRIDTRIM9
STRING (EMBL)TRIM9
ZODIACTRIM9
Ontologies - Pathways
QuickGOQ9C026
Ontology : AmiGOSNARE binding  ubiquitin-protein transferase activity  protein binding  cytoplasm  cytosol  cytoskeleton  synaptic vesicle  zinc ion binding  synaptic vesicle exocytosis  protein ubiquitination  protein domain specific binding  cell junction  dendrite  negative regulation of SNARE complex assembly  protein homodimerization activity  proteasome-mediated ubiquitin-dependent protein catabolic process  negative regulation of calcium ion-dependent exocytosis  
Ontology : EGO-EBISNARE binding  ubiquitin-protein transferase activity  protein binding  cytoplasm  cytosol  cytoskeleton  synaptic vesicle  zinc ion binding  synaptic vesicle exocytosis  protein ubiquitination  protein domain specific binding  cell junction  dendrite  negative regulation of SNARE complex assembly  protein homodimerization activity  proteasome-mediated ubiquitin-dependent protein catabolic process  negative regulation of calcium ion-dependent exocytosis  
NDEx NetworkTRIM9
Atlas of Cancer Signalling NetworkTRIM9
Wikipedia pathwaysTRIM9
Orthology - Evolution
OrthoDB114088
GeneTree (enSembl)ENSG00000100505
Phylogenetic Trees/Animal Genes : TreeFamTRIM9
HOVERGENQ9C026
HOGENOMQ9C026
Homologs : HomoloGeneTRIM9
Homology/Alignments : Family Browser (UCSC)TRIM9
Gene fusions - Rearrangements
Fusion: TCGANADSYN1 TRIM9
Fusion: TCGAPYGL TRIM9
Fusion: Tumor Portal TRIM9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM9
dbVarTRIM9
ClinVarTRIM9
1000_GenomesTRIM9 
Exome Variant ServerTRIM9
ExAC (Exome Aggregation Consortium)ENSG00000100505
GNOMAD BrowserENSG00000100505
Genetic variants : HAPMAP114088
Genomic Variants (DGV)TRIM9 [DGVbeta]
DECIPHERTRIM9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM9 
Mutations
ICGC Data PortalTRIM9 
TCGA Data PortalTRIM9 
Broad Tumor PortalTRIM9
OASIS PortalTRIM9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM9
DgiDB (Drug Gene Interaction Database)TRIM9
DoCM (Curated mutations)TRIM9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM9 (select a term)
intoGenTRIM9
Cancer3DTRIM9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606555   
Orphanet
MedgenTRIM9
Genetic Testing Registry TRIM9
NextProtQ9C026 [Medical]
TSGene114088
GENETestsTRIM9
Target ValidationTRIM9
Huge Navigator TRIM9 [HugePedia]
snp3D : Map Gene to Disease114088
BioCentury BCIQTRIM9
ClinGenTRIM9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114088
Chemical/Pharm GKB GenePA38116
Clinical trialTRIM9
Miscellaneous
canSAR (ICR)TRIM9 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM9
EVEXTRIM9
GoPubMedTRIM9
iHOPTRIM9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:34:04 CET 2017

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