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TRIML1 (tripartite motif family like 1)

Identity

Alias_symbol (synonym)FLJ36180
RNF209
Other alias
HGNC (Hugo) TRIML1
LocusID (NCBI) 339976
Atlas_Id 75188
Location 4q35.2  [Link to chromosome band 4q35]
Location_base_pair Starts at 188139441 and ends at 188147740 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIML1   26698
Cards
Entrez_Gene (NCBI)TRIML1  339976  tripartite motif family like 1
AliasesRNF209
GeneCards (Weizmann)TRIML1
Ensembl hg19 (Hinxton)ENSG00000184108 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184108 [Gene_View]  chr4:188139441-188147740 [Contig_View]  TRIML1 [Vega]
ICGC DataPortalENSG00000184108
TCGA cBioPortalTRIML1
AceView (NCBI)TRIML1
Genatlas (Paris)TRIML1
WikiGenes339976
SOURCE (Princeton)TRIML1
Genetics Home Reference (NIH)TRIML1
Genomic and cartography
GoldenPath hg38 (UCSC)TRIML1  -     chr4:188139441-188147740 +  4q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIML1  -     4q35.2   [Description]    (hg19-Feb_2009)
EnsemblTRIML1 - 4q35.2 [CytoView hg19]  TRIML1 - 4q35.2 [CytoView hg38]
Mapping of homologs : NCBITRIML1 [Mapview hg19]  TRIML1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093499 BC015684 BC113860 BC114469 DB058735
RefSeq transcript (Entrez)NM_178556
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIML1
Cluster EST : UnigeneHs.348618 [ NCBI ]
CGAP (NCI)Hs.348618
Alternative Splicing GalleryENSG00000184108
Gene ExpressionTRIML1 [ NCBI-GEO ]   TRIML1 [ EBI - ARRAY_EXPRESS ]   TRIML1 [ SEEK ]   TRIML1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIML1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339976
GTEX Portal (Tissue expression)TRIML1
Human Protein AtlasENSG00000184108-TRIML1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9V2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9V2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9V2
Splice isoforms : SwissVarQ8N9V2
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ8N9V2
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam13765    pfam00622   
Domain families : Smart (EMBL)PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIML1
DMDM Disease mutations339976
Blocks (Seattle)TRIML1
SuperfamilyQ8N9V2
Human Protein Atlas [tissue]ENSG00000184108-TRIML1 [tissue]
Peptide AtlasQ8N9V2
HPRD08774
IPIIPI00167821   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9V2
IntAct (EBI)Q8N9V2
FunCoupENSG00000184108
BioGRIDTRIML1
STRING (EMBL)TRIML1
ZODIACTRIML1
Ontologies - Pathways
QuickGOQ8N9V2
Ontology : AmiGOmulticellular organism development  zinc ion binding  protein ubiquitination  transferase activity  
Ontology : EGO-EBImulticellular organism development  zinc ion binding  protein ubiquitination  transferase activity  
NDEx NetworkTRIML1
Atlas of Cancer Signalling NetworkTRIML1
Wikipedia pathwaysTRIML1
Orthology - Evolution
OrthoDB339976
GeneTree (enSembl)ENSG00000184108
Phylogenetic Trees/Animal Genes : TreeFamTRIML1
HOVERGENQ8N9V2
HOGENOMQ8N9V2
Homologs : HomoloGeneTRIML1
Homology/Alignments : Family Browser (UCSC)TRIML1
Gene fusions - Rearrangements
Tumor Fusion PortalTRIML1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIML1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIML1
dbVarTRIML1
ClinVarTRIML1
1000_GenomesTRIML1 
Exome Variant ServerTRIML1
ExAC (Exome Aggregation Consortium)ENSG00000184108
GNOMAD BrowserENSG00000184108
Genetic variants : HAPMAP339976
Genomic Variants (DGV)TRIML1 [DGVbeta]
DECIPHERTRIML1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIML1 
Mutations
ICGC Data PortalTRIML1 
TCGA Data PortalTRIML1 
Broad Tumor PortalTRIML1
OASIS PortalTRIML1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIML1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIML1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIML1
DgiDB (Drug Gene Interaction Database)TRIML1
DoCM (Curated mutations)TRIML1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIML1 (select a term)
intoGenTRIML1
Cancer3DTRIML1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRIML1
MedgenTRIML1
Genetic Testing Registry TRIML1
NextProtQ8N9V2 [Medical]
TSGene339976
GENETestsTRIML1
Target ValidationTRIML1
Huge Navigator TRIML1 [HugePedia]
snp3D : Map Gene to Disease339976
BioCentury BCIQTRIML1
ClinGenTRIML1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339976
Chemical/Pharm GKB GenePA162407030
Clinical trialTRIML1
Miscellaneous
canSAR (ICR)TRIML1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIML1
EVEXTRIML1
GoPubMedTRIML1
iHOPTRIML1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:11:07 CET 2017

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