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TRIML1 (tripartite motif family like 1)

Identity

Alias (NCBI)RNF209
HGNC (Hugo) TRIML1
HGNC Alias symbFLJ36180
RNF209
LocusID (NCBI) 339976
Atlas_Id 75188
Location 4q35.2  [Link to chromosome band 4q35]
Location_base_pair Starts at 188139441 and ends at 188147740 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIML1   26698
Cards
Entrez_Gene (NCBI)TRIML1    tripartite motif family like 1
AliasesRNF209
GeneCards (Weizmann)TRIML1
Ensembl hg19 (Hinxton)ENSG00000184108 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184108 [Gene_View]  ENSG00000184108 [Sequence]  chr4:188139441-188147740 [Contig_View]  TRIML1 [Vega]
ICGC DataPortalENSG00000184108
TCGA cBioPortalTRIML1
AceView (NCBI)TRIML1
Genatlas (Paris)TRIML1
SOURCE (Princeton)TRIML1
Genetics Home Reference (NIH)TRIML1
Genomic and cartography
GoldenPath hg38 (UCSC)TRIML1  -     chr4:188139441-188147740 +  4q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIML1  -     4q35.2   [Description]    (hg19-Feb_2009)
GoldenPathTRIML1 - 4q35.2 [CytoView hg19]  TRIML1 - 4q35.2 [CytoView hg38]
ImmunoBaseENSG00000184108
Genome Data Viewer NCBITRIML1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK093499 BC015684 BC113860 BC114469 DB058735
RefSeq transcript (Entrez)NM_178556
Consensus coding sequences : CCDS (NCBI)TRIML1
Gene ExpressionTRIML1 [ NCBI-GEO ]   TRIML1 [ EBI - ARRAY_EXPRESS ]   TRIML1 [ SEEK ]   TRIML1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIML1 [ Firebrowse - Broad ]
GenevisibleExpression of TRIML1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339976
GTEX Portal (Tissue expression)TRIML1
Human Protein AtlasENSG00000184108-TRIML1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9V2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9V2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9V2
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ8N9V2
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    B30.2/SPRY_sf    Butyrophylin_SPRY    ConA-like_dom_sf    PRY    SPRY_dom    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam13765    pfam00622   
Domain families : Smart (EMBL)PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIML1
SuperfamilyQ8N9V2
AlphaFold pdb e-kbQ8N9V2   
Human Protein Atlas [tissue]ENSG00000184108-TRIML1 [tissue]
HPRD08774
Protein Interaction databases
DIP (DOE-UCLA)Q8N9V2
IntAct (EBI)Q8N9V2
BioGRIDTRIML1
STRING (EMBL)TRIML1
ZODIACTRIML1
Ontologies - Pathways
QuickGOQ8N9V2
Ontology : AmiGOprotein polyubiquitination  nucleoplasm  cytoplasm  cytosol  multicellular organism development  regulation of gene expression  positive regulation of autophagy  protein ubiquitination  protein kinase binding  regulation of protein localization  protein homodimerization activity  positive regulation of I-kappaB kinase/NF-kappaB signaling  innate immune response  regulation of viral entry into host cell  metal ion binding  positive regulation of NF-kappaB transcription factor activity  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  nucleoplasm  cytoplasm  cytosol  multicellular organism development  regulation of gene expression  positive regulation of autophagy  protein ubiquitination  protein kinase binding  regulation of protein localization  protein homodimerization activity  positive regulation of I-kappaB kinase/NF-kappaB signaling  innate immune response  regulation of viral entry into host cell  metal ion binding  positive regulation of NF-kappaB transcription factor activity  ubiquitin protein ligase activity  
NDEx NetworkTRIML1
Atlas of Cancer Signalling NetworkTRIML1
Wikipedia pathwaysTRIML1
Orthology - Evolution
OrthoDB339976
GeneTree (enSembl)ENSG00000184108
Phylogenetic Trees/Animal Genes : TreeFamTRIML1
Homologs : HomoloGeneTRIML1
Homology/Alignments : Family Browser (UCSC)TRIML1
Gene fusions - Rearrangements
Fusion : QuiverTRIML1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIML1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIML1
dbVarTRIML1
ClinVarTRIML1
MonarchTRIML1
1000_GenomesTRIML1 
Exome Variant ServerTRIML1
GNOMAD BrowserENSG00000184108
Varsome BrowserTRIML1
ACMGTRIML1 variants
VarityQ8N9V2
Genomic Variants (DGV)TRIML1 [DGVbeta]
DECIPHERTRIML1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIML1 
Mutations
ICGC Data PortalTRIML1 
TCGA Data PortalTRIML1 
Broad Tumor PortalTRIML1
OASIS PortalTRIML1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIML1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIML1
Mutations and Diseases : HGMDTRIML1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIML1
DgiDB (Drug Gene Interaction Database)TRIML1
DoCM (Curated mutations)TRIML1
CIViC (Clinical Interpretations of Variants in Cancer)TRIML1
Cancer3DTRIML1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRIML1
MedgenTRIML1
Genetic Testing Registry TRIML1
NextProtQ8N9V2 [Medical]
GENETestsTRIML1
Target ValidationTRIML1
Huge Navigator TRIML1 [HugePedia]
ClinGenTRIML1
Clinical trials, drugs, therapy
MyCancerGenomeTRIML1
Protein Interactions : CTDTRIML1
Pharm GKB GenePA162407030
PharosQ8N9V2
Clinical trialTRIML1
Miscellaneous
canSAR (ICR)TRIML1
HarmonizomeTRIML1
DataMed IndexTRIML1
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIML1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:00 CEST 2021

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