Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIML2 (tripartite motif family like 2)

Identity

Alias_symbol (synonym)FLJ25801
SPRYD6
Other alias
HGNC (Hugo) TRIML2
LocusID (NCBI) 205860
Atlas_Id 75189
Location 4q35.2  [Link to chromosome band 4q35]
Location_base_pair Starts at 188091272 and ends at 188105587 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIML2   26378
Cards
Entrez_Gene (NCBI)TRIML2  205860  tripartite motif family like 2
AliasesSPRYD6
GeneCards (Weizmann)TRIML2
Ensembl hg19 (Hinxton)ENSG00000179046 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179046 [Gene_View]  chr4:188091272-188105587 [Contig_View]  TRIML2 [Vega]
ICGC DataPortalENSG00000179046
TCGA cBioPortalTRIML2
AceView (NCBI)TRIML2
Genatlas (Paris)TRIML2
WikiGenes205860
SOURCE (Princeton)TRIML2
Genetics Home Reference (NIH)TRIML2
Genomic and cartography
GoldenPath hg38 (UCSC)TRIML2  -     chr4:188091272-188105587 -  4q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIML2  -     4q35.2   [Description]    (hg19-Feb_2009)
EnsemblTRIML2 - 4q35.2 [CytoView hg19]  TRIML2 - 4q35.2 [CytoView hg38]
Mapping of homologs : NCBITRIML2 [Mapview hg19]  TRIML2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA729485 AK098667 AK300428 AY435043 AY435044
RefSeq transcript (Entrez)NM_001303419 NM_173553
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIML2
Cluster EST : UnigeneHs.276429 [ NCBI ]
CGAP (NCI)Hs.276429
Alternative Splicing GalleryENSG00000179046
Gene ExpressionTRIML2 [ NCBI-GEO ]   TRIML2 [ EBI - ARRAY_EXPRESS ]   TRIML2 [ SEEK ]   TRIML2 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIML2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)205860
GTEX Portal (Tissue expression)TRIML2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7C3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7C3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7C3
Splice isoforms : SwissVarQ8N7C3
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ8N7C3
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam13765    pfam00622   
Domain families : Smart (EMBL)PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIML2
DMDM Disease mutations205860
Blocks (Seattle)TRIML2
SuperfamilyQ8N7C3
Human Protein AtlasENSG00000179046
Peptide AtlasQ8N7C3
HPRD08696
IPIIPI00167172   IPI00922755   IPI00922775   IPI01014212   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7C3
IntAct (EBI)Q8N7C3
FunCoupENSG00000179046
BioGRIDTRIML2
STRING (EMBL)TRIML2
ZODIACTRIML2
Ontologies - Pathways
QuickGOQ8N7C3
Ontology : AmiGOprotein binding  protein ubiquitination  transferase activity  response to retinoic acid  
Ontology : EGO-EBIprotein binding  protein ubiquitination  transferase activity  response to retinoic acid  
NDEx NetworkTRIML2
Atlas of Cancer Signalling NetworkTRIML2
Wikipedia pathwaysTRIML2
Orthology - Evolution
OrthoDB205860
GeneTree (enSembl)ENSG00000179046
Phylogenetic Trees/Animal Genes : TreeFamTRIML2
HOVERGENQ8N7C3
HOGENOMQ8N7C3
Homologs : HomoloGeneTRIML2
Homology/Alignments : Family Browser (UCSC)TRIML2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIML2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIML2
dbVarTRIML2
ClinVarTRIML2
1000_GenomesTRIML2 
Exome Variant ServerTRIML2
ExAC (Exome Aggregation Consortium)TRIML2 (select the gene name)
Genetic variants : HAPMAP205860
Genomic Variants (DGV)TRIML2 [DGVbeta]
DECIPHERTRIML2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIML2 
Mutations
ICGC Data PortalTRIML2 
TCGA Data PortalTRIML2 
Broad Tumor PortalTRIML2
OASIS PortalTRIML2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIML2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIML2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIML2
DgiDB (Drug Gene Interaction Database)TRIML2
DoCM (Curated mutations)TRIML2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIML2 (select a term)
intoGenTRIML2
Cancer3DTRIML2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIML2
Genetic Testing Registry TRIML2
NextProtQ8N7C3 [Medical]
TSGene205860
GENETestsTRIML2
Target ValidationTRIML2
Huge Navigator TRIML2 [HugePedia]
snp3D : Map Gene to Disease205860
BioCentury BCIQTRIML2
ClinGenTRIML2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD205860
Chemical/Pharm GKB GenePA162407031
Clinical trialTRIML2
Miscellaneous
canSAR (ICR)TRIML2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIML2
EVEXTRIML2
GoPubMedTRIML2
iHOPTRIML2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:47:13 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.