Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIP10 (thyroid hormone receptor interactor 10)

Identity

Other namesCIP4
HSTP
STOT
STP
TRIP-10
HGNC (Hugo) TRIP10
LocusID (NCBI) 9322
Location 19p13.3
Location_base_pair Starts at 6739693 and ends at 6751537 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRIP10   12304
Cards
Entrez_Gene (NCBI)TRIP10  9322  thyroid hormone receptor interactor 10
GeneCards (Weizmann)TRIP10
Ensembl (Hinxton)ENSG00000125733 [Gene_View]  chr19:6739693-6751537 [Contig_View]  TRIP10 [Vega]
ICGC DataPortalENSG00000125733
cBioPortalTRIP10
AceView (NCBI)TRIP10
Genatlas (Paris)TRIP10
WikiGenes9322
SOURCE (Princeton)NM_001288962 NM_001288963 NM_004240
Genomic and cartography
GoldenPath (UCSC)TRIP10  -  19p13.3   chr19:6739693-6751537 +  19p13.3   [Description]    (hg19-Feb_2009)
EnsemblTRIP10 - 19p13.3 [CytoView]
Mapping of homologs : NCBITRIP10 [Mapview]
OMIM604504   
Gene and transcription
Genbank (Entrez)AB007845 AB072596 AF380114 AF502289 AJ000414
RefSeq transcript (Entrez)NM_001288962 NM_001288963 NM_004240
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838478 NW_004929412
Consensus coding sequences : CCDS (NCBI)TRIP10
Cluster EST : UnigeneHs.515094 [ NCBI ]
CGAP (NCI)Hs.515094
Alternative Splicing : Fast-db (Paris)GSHG0014512
Alternative Splicing GalleryENSG00000125733
Gene ExpressionTRIP10 [ NCBI-GEO ]     TRIP10 [ SEEK ]   TRIP10 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15642 (Uniprot)
NextProtQ15642  [Medical]
With graphics : InterProQ15642
Splice isoforms : SwissVarQ15642 (Swissvar)
Domaine pattern : Prosite (Expaxy)FCH (PS50133)    SH3 (PS50002)   
Domains : Interpro (EBI)CIP4 [organisation]   FCH_dom [organisation]   SH3_domain [organisation]  
Related proteins : CluSTrQ15642
Domain families : Pfam (Sanger)FCH (PF00611)    SH3_1 (PF00018)   
Domain families : Pfam (NCBI)pfam00611    pfam00018   
Domain families : Smart (EMBL)FCH (SM00055)  SH3 (SM00326)  
DMDM Disease mutations9322
Blocks (Seattle)Q15642
PDB (SRS)2CT4    2EFK    2KE4   
PDB (PDBSum)2CT4    2EFK    2KE4   
PDB (IMB)2CT4    2EFK    2KE4   
PDB (RSDB)2CT4    2EFK    2KE4   
Human Protein AtlasENSG00000125733 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ15642
HPRD05142
IPIIPI00168849   IPI00018804   IPI00395401   IPI00807460   IPI00645818   
Protein Interaction databases
DIP (DOE-UCLA)Q15642
IntAct (EBI)Q15642
FunCoupENSG00000125733
BioGRIDTRIP10
InParanoidQ15642
Interologous Interaction database Q15642
IntegromeDBTRIP10
STRING (EMBL)TRIP10
Ontologies - Pathways
Ontology : AmiGOphagocytic cup  protein binding  nucleus  nucleolus  cytoplasm  lysosome  Golgi apparatus  cytosol  cytoskeleton  cell cortex  endocytosis  cell communication  signal transduction  small GTPase mediated signal transduction  lipid binding  actin cytoskeleton organization  identical protein binding  cell projection  intracellular membrane-bounded organelle  perinuclear region of cytoplasm  regulation of small GTPase mediated signal transduction  extracellular vesicular exosome  
Ontology : EGO-EBIphagocytic cup  protein binding  nucleus  nucleolus  cytoplasm  lysosome  Golgi apparatus  cytosol  cytoskeleton  cell cortex  endocytosis  cell communication  signal transduction  small GTPase mediated signal transduction  lipid binding  actin cytoskeleton organization  identical protein binding  cell projection  intracellular membrane-bounded organelle  perinuclear region of cytoplasm  regulation of small GTPase mediated signal transduction  extracellular vesicular exosome  
Pathways : KEGGInsulin signaling pathway   
Protein Interaction DatabaseTRIP10
Wikipedia pathwaysTRIP10
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TRIP10
snp3D : Map Gene to Disease9322
SNP (GeneSNP Utah)TRIP10
SNP : HGBaseTRIP10
Genetic variants : HAPMAPTRIP10
Exome VariantTRIP10
1000_GenomesTRIP10 
ICGC programENSG00000125733 
Somatic Mutations in Cancer : COSMICTRIP10 
CONAN: Copy Number AnalysisTRIP10 
Mutations and Diseases : HGMDTRIP10
Genomic VariantsTRIP10  TRIP10 [DGVbeta]
dbVarTRIP10
ClinVarTRIP10
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM604504   
MedgenTRIP10
GENETestsTRIP10
Disease Genetic AssociationTRIP10
Huge Navigator TRIP10 [HugePedia]  TRIP10 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneTRIP10
Homology/Alignments : Family Browser (UCSC)TRIP10
Phylogenetic Trees/Animal Genes : TreeFamTRIP10
Chemical/Protein Interactions : CTD9322
Chemical/Pharm GKB GenePA36983
Clinical trialTRIP10
Cancer Resource (Charite)ENSG00000125733
Other databases
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
CoreMineTRIP10
iHOPTRIP10
OncoSearchTRIP10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:19:53 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.