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TRIP13 (thyroid hormone receptor interactor 13)

Identity

Alias (NCBI)16E1BP
MVA3
OOMD9
HGNC (Hugo) TRIP13
HGNC Alias symb16E1BP
HGNC Alias namethyroid receptor interacting protein 13
LocusID (NCBI) 9319
Atlas_Id 51188
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 892884 and ends at 918120 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIP13   12307
Cards
Entrez_Gene (NCBI)TRIP13    thyroid hormone receptor interactor 13
Aliases16E1BP; MVA3; OOMD9
GeneCards (Weizmann)TRIP13
Ensembl hg19 (Hinxton)ENSG00000071539 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000071539 [Gene_View]  ENSG00000071539 [Sequence]  chr5:892884-918120 [Contig_View]  TRIP13 [Vega]
ICGC DataPortalENSG00000071539
TCGA cBioPortalTRIP13
AceView (NCBI)TRIP13
Genatlas (Paris)TRIP13
SOURCE (Princeton)TRIP13
Genetics Home Reference (NIH)TRIP13
Genomic and cartography
GoldenPath hg38 (UCSC)TRIP13  -     chr5:892884-918120 +  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIP13  -     5p15.33   [Description]    (hg19-Feb_2009)
GoldenPathTRIP13 - 5p15.33 [CytoView hg19]  TRIP13 - 5p15.33 [CytoView hg38]
ImmunoBaseENSG00000071539
Genome Data Viewer NCBITRIP13 [Mapview hg19]  
OMIM604507   617598   619011   
Gene and transcription
Genbank (Entrez)AK310376 BC000404 BC019294 BG722761 BM999741
RefSeq transcript (Entrez)NM_001166260 NM_004237
Consensus coding sequences : CCDS (NCBI)TRIP13
Gene ExpressionTRIP13 [ NCBI-GEO ]   TRIP13 [ EBI - ARRAY_EXPRESS ]   TRIP13 [ SEEK ]   TRIP13 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIP13 [ Firebrowse - Broad ]
GenevisibleExpression of TRIP13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9319
GTEX Portal (Tissue expression)TRIP13
Human Protein AtlasENSG00000071539-TRIP13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15645   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15645  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15645
PhosPhoSitePlusQ15645
Domaine pattern : Prosite (Expaxy)AAA (PS00674)   
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    ATPase_AAA_CS    ClpA/B    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)   
Domain families : Pfam (NCBI)pfam00004   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)TRIP13
PDB (RSDB)5VQ9    5VQA    5WC2    6F0X    6LK0   
PDB Europe5VQ9    5VQA    5WC2    6F0X    6LK0   
PDB (PDBSum)5VQ9    5VQA    5WC2    6F0X    6LK0   
PDB (IMB)5VQ9    5VQA    5WC2    6F0X    6LK0   
Structural Biology KnowledgeBase5VQ9    5VQA    5WC2    6F0X    6LK0   
SCOP (Structural Classification of Proteins)5VQ9    5VQA    5WC2    6F0X    6LK0   
CATH (Classification of proteins structures)5VQ9    5VQA    5WC2    6F0X    6LK0   
SuperfamilyQ15645
AlphaFold pdb e-kbQ15645   
Human Protein Atlas [tissue]ENSG00000071539-TRIP13 [tissue]
HPRD05145
Protein Interaction databases
DIP (DOE-UCLA)Q15645
IntAct (EBI)Q15645
BioGRIDTRIP13
STRING (EMBL)TRIP13
ZODIACTRIP13
Ontologies - Pathways
QuickGOQ15645
Ontology : AmiGOoocyte maturation  male germ cell nucleus  transcription coregulator activity  protein binding  ATP binding  nucleus  chromosome  double-strand break repair  regulation of transcription, DNA-templated  transcription by RNA polymerase II  mitotic spindle assembly checkpoint signaling  synaptonemal complex assembly  reciprocal meiotic recombination  reciprocal meiotic recombination  male meiosis I  female meiosis I  spermatogenesis  spermatid development  identical protein binding  oogenesis  meiotic recombination checkpoint signaling  
Ontology : EGO-EBIoocyte maturation  male germ cell nucleus  transcription coregulator activity  protein binding  ATP binding  nucleus  chromosome  double-strand break repair  regulation of transcription, DNA-templated  transcription by RNA polymerase II  mitotic spindle assembly checkpoint signaling  synaptonemal complex assembly  reciprocal meiotic recombination  reciprocal meiotic recombination  male meiosis I  female meiosis I  spermatogenesis  spermatid development  identical protein binding  oogenesis  meiotic recombination checkpoint signaling  
NDEx NetworkTRIP13
Atlas of Cancer Signalling NetworkTRIP13
Wikipedia pathwaysTRIP13
Orthology - Evolution
OrthoDB9319
GeneTree (enSembl)ENSG00000071539
Phylogenetic Trees/Animal Genes : TreeFamTRIP13
Homologs : HomoloGeneTRIP13
Homology/Alignments : Family Browser (UCSC)TRIP13
Gene fusions - Rearrangements
Fusion : QuiverTRIP13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIP13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIP13
dbVarTRIP13
ClinVarTRIP13
MonarchTRIP13
1000_GenomesTRIP13 
Exome Variant ServerTRIP13
GNOMAD BrowserENSG00000071539
Varsome BrowserTRIP13
ACMGTRIP13 variants
VarityQ15645
Genomic Variants (DGV)TRIP13 [DGVbeta]
DECIPHERTRIP13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIP13 
Mutations
ICGC Data PortalTRIP13 
TCGA Data PortalTRIP13 
Broad Tumor PortalTRIP13
OASIS PortalTRIP13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIP13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIP13
Mutations and Diseases : HGMDTRIP13
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIP13
DgiDB (Drug Gene Interaction Database)TRIP13
DoCM (Curated mutations)TRIP13
CIViC (Clinical Interpretations of Variants in Cancer)TRIP13
Cancer3DTRIP13
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604507    617598    619011   
Orphanet
DisGeNETTRIP13
MedgenTRIP13
Genetic Testing Registry TRIP13
NextProtQ15645 [Medical]
GENETestsTRIP13
Target ValidationTRIP13
Huge Navigator TRIP13 [HugePedia]
ClinGenTRIP13
Clinical trials, drugs, therapy
MyCancerGenomeTRIP13
Protein Interactions : CTDTRIP13
Pharm GKB GenePA36986
PharosQ15645
Clinical trialTRIP13
Miscellaneous
canSAR (ICR)TRIP13
HarmonizomeTRIP13
DataMed IndexTRIP13
Probes
Litterature
PubMed109 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIP13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:26 CEST 2021

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