Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIP13 (thyroid hormone receptor interactor 13)

Identity

Alias_symbol (synonym)16E1BP
Other alias
HGNC (Hugo) TRIP13
LocusID (NCBI) 9319
Atlas_Id 51188
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 892969 and ends at 909047 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIP13   12307
Cards
Entrez_Gene (NCBI)TRIP13  9319  thyroid hormone receptor interactor 13
Aliases16E1BP
GeneCards (Weizmann)TRIP13
Ensembl hg19 (Hinxton)ENSG00000071539 [Gene_View]  chr5:892969-909047 [Contig_View]  TRIP13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000071539 [Gene_View]  chr5:892969-909047 [Contig_View]  TRIP13 [Vega]
ICGC DataPortalENSG00000071539
TCGA cBioPortalTRIP13
AceView (NCBI)TRIP13
Genatlas (Paris)TRIP13
WikiGenes9319
SOURCE (Princeton)TRIP13
Genetics Home Reference (NIH)TRIP13
Genomic and cartography
GoldenPath hg19 (UCSC)TRIP13  -     chr5:892969-909047 +  5p15.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRIP13  -     5p15.33   [Description]    (hg38-Dec_2013)
EnsemblTRIP13 - 5p15.33 [CytoView hg19]  TRIP13 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBITRIP13 [Mapview hg19]  TRIP13 [Mapview hg38]
OMIM604507   
Gene and transcription
Genbank (Entrez)AK310376 BC000404 BC019294 BG722761 BM999741
RefSeq transcript (Entrez)NM_001166260 NM_004237
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)TRIP13
Cluster EST : UnigeneHs.436187 [ NCBI ]
CGAP (NCI)Hs.436187
Alternative Splicing GalleryENSG00000071539
Gene ExpressionTRIP13 [ NCBI-GEO ]   TRIP13 [ EBI - ARRAY_EXPRESS ]   TRIP13 [ SEEK ]   TRIP13 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIP13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9319
GTEX Portal (Tissue expression)TRIP13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15645   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15645  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15645
Splice isoforms : SwissVarQ15645
PhosPhoSitePlusQ15645
Domaine pattern : Prosite (Expaxy)AAA (PS00674)   
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    ATPase_AAA_CS    ClpA/B    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)   
Domain families : Pfam (NCBI)pfam00004   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)TRIP13
DMDM Disease mutations9319
Blocks (Seattle)TRIP13
SuperfamilyQ15645
Human Protein AtlasENSG00000071539
Peptide AtlasQ15645
HPRD05145
IPIIPI00003505   IPI00847729   IPI00953289   IPI00965548   
Protein Interaction databases
DIP (DOE-UCLA)Q15645
IntAct (EBI)Q15645
FunCoupENSG00000071539
BioGRIDTRIP13
STRING (EMBL)TRIP13
ZODIACTRIP13
Ontologies - Pathways
QuickGOQ15645
Ontology : AmiGOoocyte maturation  male germ cell nucleus  transcription cofactor activity  protein binding  ATP binding  nucleus  double-strand break repair  transcription from RNA polymerase II promoter  synaptonemal complex assembly  reciprocal meiotic recombination  male meiosis I  female meiosis I  spermatogenesis  spermatid development  identical protein binding  oogenesis  regulation of nucleic acid-templated transcription  
Ontology : EGO-EBIoocyte maturation  male germ cell nucleus  transcription cofactor activity  protein binding  ATP binding  nucleus  double-strand break repair  transcription from RNA polymerase II promoter  synaptonemal complex assembly  reciprocal meiotic recombination  male meiosis I  female meiosis I  spermatogenesis  spermatid development  identical protein binding  oogenesis  regulation of nucleic acid-templated transcription  
NDEx NetworkTRIP13
Atlas of Cancer Signalling NetworkTRIP13
Wikipedia pathwaysTRIP13
Orthology - Evolution
OrthoDB9319
GeneTree (enSembl)ENSG00000071539
Phylogenetic Trees/Animal Genes : TreeFamTRIP13
HOVERGENQ15645
HOGENOMQ15645
Homologs : HomoloGeneTRIP13
Homology/Alignments : Family Browser (UCSC)TRIP13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIP13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIP13
dbVarTRIP13
ClinVarTRIP13
1000_GenomesTRIP13 
Exome Variant ServerTRIP13
ExAC (Exome Aggregation Consortium)TRIP13 (select the gene name)
Genetic variants : HAPMAP9319
Genomic Variants (DGV)TRIP13 [DGVbeta]
DECIPHER (Syndromes)5:892969-909047  ENSG00000071539
CONAN: Copy Number AnalysisTRIP13 
Mutations
ICGC Data PortalTRIP13 
TCGA Data PortalTRIP13 
Broad Tumor PortalTRIP13
OASIS PortalTRIP13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIP13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIP13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIP13
DgiDB (Drug Gene Interaction Database)TRIP13
DoCM (Curated mutations)TRIP13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIP13 (select a term)
intoGenTRIP13
Cancer3DTRIP13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604507   
Orphanet
MedgenTRIP13
Genetic Testing Registry TRIP13
NextProtQ15645 [Medical]
TSGene9319
GENETestsTRIP13
Huge Navigator TRIP13 [HugePedia]
snp3D : Map Gene to Disease9319
BioCentury BCIQTRIP13
ClinGenTRIP13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9319
Chemical/Pharm GKB GenePA36986
Clinical trialTRIP13
Miscellaneous
canSAR (ICR)TRIP13 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIP13
EVEXTRIP13
GoPubMedTRIP13
iHOPTRIP13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:23:32 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.