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TRIP4 (thyroid hormone receptor interactor 4)

Identity

Alias_symbol (synonym)HsT17391
ZC2HC5
Other aliasASC-1
ASC1
MDCDC
SMABF1
HGNC (Hugo) TRIP4
LocusID (NCBI) 9325
Atlas_Id 75191
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 64387810 and ends at 64455303 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KIAA0101 (15q22.31) / TRIP4 (15q22.31)TRIP4 (15q22.31) / ADORA3 (1p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIP4   12310
Cards
Entrez_Gene (NCBI)TRIP4  9325  thyroid hormone receptor interactor 4
AliasesASC-1; ASC1; HsT17391; MDCDC; 
SMABF1; ZC2HC5
GeneCards (Weizmann)TRIP4
Ensembl hg19 (Hinxton)ENSG00000103671 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103671 [Gene_View]  chr15:64387810-64455303 [Contig_View]  TRIP4 [Vega]
ICGC DataPortalENSG00000103671
TCGA cBioPortalTRIP4
AceView (NCBI)TRIP4
Genatlas (Paris)TRIP4
WikiGenes9325
SOURCE (Princeton)TRIP4
Genetics Home Reference (NIH)TRIP4
Genomic and cartography
GoldenPath hg38 (UCSC)TRIP4  -     chr15:64387810-64455303 +  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIP4  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblTRIP4 - 15q22.31 [CytoView hg19]  TRIP4 - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBITRIP4 [Mapview hg19]  TRIP4 [Mapview hg38]
OMIM604501   616866   617066   
Gene and transcription
Genbank (Entrez)AK000433 AK314319 BC012448 BG166305 BQ225927
RefSeq transcript (Entrez)NM_001321924 NM_016213
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIP4
Cluster EST : UnigeneHs.500340 [ NCBI ]
CGAP (NCI)Hs.500340
Alternative Splicing GalleryENSG00000103671
Gene ExpressionTRIP4 [ NCBI-GEO ]   TRIP4 [ EBI - ARRAY_EXPRESS ]   TRIP4 [ SEEK ]   TRIP4 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9325
GTEX Portal (Tissue expression)TRIP4
Human Protein AtlasENSG00000103671-TRIP4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15650   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15650  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15650
Splice isoforms : SwissVarQ15650
PhosPhoSitePlusQ15650
Domains : Interpro (EBI)ASCH_domain    PUA-like_domain    Znf_C2HC5   
Domain families : Pfam (Sanger)ASCH (PF04266)    zf-C2HC5 (PF06221)   
Domain families : Pfam (NCBI)pfam04266    pfam06221   
Domain families : Smart (EMBL)ASCH (SM01022)  
Conserved Domain (NCBI)TRIP4
DMDM Disease mutations9325
Blocks (Seattle)TRIP4
PDB (SRS)2E5O   
PDB (PDBSum)2E5O   
PDB (IMB)2E5O   
PDB (RSDB)2E5O   
Structural Biology KnowledgeBase2E5O   
SCOP (Structural Classification of Proteins)2E5O   
CATH (Classification of proteins structures)2E5O   
SuperfamilyQ15650
Human Protein Atlas [tissue]ENSG00000103671-TRIP4 [tissue]
Peptide AtlasQ15650
HPRD05140
IPIIPI00018840   
Protein Interaction databases
DIP (DOE-UCLA)Q15650
IntAct (EBI)Q15650
FunCoupENSG00000103671
BioGRIDTRIP4
STRING (EMBL)TRIP4
ZODIACTRIP4
Ontologies - Pathways
QuickGOQ15650
Ontology : AmiGOprotease binding  transcription coactivator activity  protein binding  nucleus  nucleoplasm  cytoplasm  microtubule organizing center  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  nuclear body  ligand-dependent nuclear receptor binding  estrogen receptor binding  intracellular estrogen receptor signaling pathway  neuromuscular junction  histone acetyltransferase binding  ubiquitin-like protein ligase binding  regulation of myoblast differentiation  positive regulation of transcription, DNA-templated  activating signal cointegrator 1 complex  toxin transport  
Ontology : EGO-EBIprotease binding  transcription coactivator activity  protein binding  nucleus  nucleoplasm  cytoplasm  microtubule organizing center  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  nuclear body  ligand-dependent nuclear receptor binding  estrogen receptor binding  intracellular estrogen receptor signaling pathway  neuromuscular junction  histone acetyltransferase binding  ubiquitin-like protein ligase binding  regulation of myoblast differentiation  positive regulation of transcription, DNA-templated  activating signal cointegrator 1 complex  toxin transport  
NDEx NetworkTRIP4
Atlas of Cancer Signalling NetworkTRIP4
Wikipedia pathwaysTRIP4
Orthology - Evolution
OrthoDB9325
GeneTree (enSembl)ENSG00000103671
Phylogenetic Trees/Animal Genes : TreeFamTRIP4
HOVERGENQ15650
HOGENOMQ15650
Homologs : HomoloGeneTRIP4
Homology/Alignments : Family Browser (UCSC)TRIP4
Gene fusions - Rearrangements
Tumor Fusion PortalTRIP4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIP4
dbVarTRIP4
ClinVarTRIP4
1000_GenomesTRIP4 
Exome Variant ServerTRIP4
ExAC (Exome Aggregation Consortium)ENSG00000103671
GNOMAD BrowserENSG00000103671
Genetic variants : HAPMAP9325
Genomic Variants (DGV)TRIP4 [DGVbeta]
DECIPHERTRIP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIP4 
Mutations
ICGC Data PortalTRIP4 
TCGA Data PortalTRIP4 
Broad Tumor PortalTRIP4
OASIS PortalTRIP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIP4
DgiDB (Drug Gene Interaction Database)TRIP4
DoCM (Curated mutations)TRIP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIP4 (select a term)
intoGenTRIP4
Cancer3DTRIP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604501    616866    617066   
Orphanet
DisGeNETTRIP4
MedgenTRIP4
Genetic Testing Registry TRIP4
NextProtQ15650 [Medical]
TSGene9325
GENETestsTRIP4
Target ValidationTRIP4
Huge Navigator TRIP4 [HugePedia]
snp3D : Map Gene to Disease9325
BioCentury BCIQTRIP4
ClinGenTRIP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9325
Chemical/Pharm GKB GenePA36988
Clinical trialTRIP4
Miscellaneous
canSAR (ICR)TRIP4 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIP4
EVEXTRIP4
GoPubMedTRIP4
iHOPTRIP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:32:38 CET 2017

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