Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TRIQK (triple QxxK/R motif containing)

Identity

Alias_namesC8orf83
chromosome 8 open reading frame 83
Alias_symbol (synonym)DKFZp779L1068
PRO0845
LOC286144
Other aliasUPF0599
HGNC (Hugo) TRIQK
LocusID (NCBI) 286144
Atlas_Id 75192
Location 8q22.1  [Link to chromosome band 8q22]
Location_base_pair Starts at 92883530 and ends at 92966144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RNF19A (8q22.2) / TRIQK (8q22.1)RUNX1T1 (8q21.3) / TRIQK (8q22.1)STK24 (13q32.2) / TRIQK (8q22.1)
TRIQK (8q22.1) / PHLDB2 (3q13.2)TRIQK (8q22.1) / RAD54B (8q22.1)TRIQK (8q22.1) / TRIQK (8q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIQK   27828
Cards
Entrez_Gene (NCBI)TRIQK  286144  triple QxxK/R motif containing
AliasesC8orf83; PRO0845; UPF0599
GeneCards (Weizmann)TRIQK
Ensembl hg19 (Hinxton)ENSG00000205133 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205133 [Gene_View]  chr8:92883530-92966144 [Contig_View]  TRIQK [Vega]
ICGC DataPortalENSG00000205133
TCGA cBioPortalTRIQK
AceView (NCBI)TRIQK
Genatlas (Paris)TRIQK
WikiGenes286144
SOURCE (Princeton)TRIQK
Genetics Home Reference (NIH)TRIQK
Genomic and cartography
GoldenPath hg38 (UCSC)TRIQK  -     chr8:92883530-92966144 -  8q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIQK  -     8q22.1   [Description]    (hg19-Feb_2009)
EnsemblTRIQK - 8q22.1 [CytoView hg19]  TRIQK - 8q22.1 [CytoView hg38]
Mapping of homologs : NCBITRIQK [Mapview hg19]  TRIQK [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF130048 AK096398 AK097956 BC031029 BC065838
RefSeq transcript (Entrez)NM_001171795 NM_001171796 NM_001171797 NM_001171798 NM_001171799 NM_001191035 NM_001191036
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIQK
Cluster EST : UnigeneHs.440643 [ NCBI ]
CGAP (NCI)Hs.440643
Alternative Splicing GalleryENSG00000205133
Gene ExpressionTRIQK [ NCBI-GEO ]   TRIQK [ EBI - ARRAY_EXPRESS ]   TRIQK [ SEEK ]   TRIQK [ MEM ]
Gene Expression Viewer (FireBrowse)TRIQK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286144
GTEX Portal (Tissue expression)TRIQK
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ629K1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ629K1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ629K1
Splice isoforms : SwissVarQ629K1
PhosPhoSitePlusQ629K1
Domains : Interpro (EBI)TRIQK   
Domain families : Pfam (Sanger)TRIQK (PF15168)   
Domain families : Pfam (NCBI)pfam15168   
Conserved Domain (NCBI)TRIQK
DMDM Disease mutations286144
Blocks (Seattle)TRIQK
SuperfamilyQ629K1
Human Protein AtlasENSG00000205133
Peptide AtlasQ629K1
IPIIPI00470526   IPI00012221   IPI00980311   IPI00983961   IPI00974258   IPI00974450   
Protein Interaction databases
DIP (DOE-UCLA)Q629K1
IntAct (EBI)Q629K1
FunCoupENSG00000205133
BioGRIDTRIQK
STRING (EMBL)TRIQK
ZODIACTRIQK
Ontologies - Pathways
QuickGOQ629K1
Ontology : AmiGOendoplasmic reticulum membrane  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum membrane  integral component of membrane  
NDEx NetworkTRIQK
Atlas of Cancer Signalling NetworkTRIQK
Wikipedia pathwaysTRIQK
Orthology - Evolution
OrthoDB286144
GeneTree (enSembl)ENSG00000205133
Phylogenetic Trees/Animal Genes : TreeFamTRIQK
HOVERGENQ629K1
HOGENOMQ629K1
Homologs : HomoloGeneTRIQK
Homology/Alignments : Family Browser (UCSC)TRIQK
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIQK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIQK
dbVarTRIQK
ClinVarTRIQK
1000_GenomesTRIQK 
Exome Variant ServerTRIQK
ExAC (Exome Aggregation Consortium)TRIQK (select the gene name)
Genetic variants : HAPMAP286144
Genomic Variants (DGV)TRIQK [DGVbeta]
DECIPHERTRIQK [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIQK 
Mutations
ICGC Data PortalTRIQK 
TCGA Data PortalTRIQK 
Broad Tumor PortalTRIQK
OASIS PortalTRIQK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIQK  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIQK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIQK
DgiDB (Drug Gene Interaction Database)TRIQK
DoCM (Curated mutations)TRIQK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIQK (select a term)
intoGenTRIQK
Cancer3DTRIQK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIQK
Genetic Testing Registry TRIQK
NextProtQ629K1 [Medical]
TSGene286144
GENETestsTRIQK
Target ValidationTRIQK
Huge Navigator TRIQK [HugePedia]
snp3D : Map Gene to Disease286144
BioCentury BCIQTRIQK
ClinGenTRIQK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286144
Chemical/Pharm GKB GenePA164717477
Clinical trialTRIQK
Miscellaneous
canSAR (ICR)TRIQK (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIQK
EVEXTRIQK
GoPubMedTRIQK
iHOPTRIQK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:42:37 CEST 2017

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