Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIR (telomerase RNA component interacting RNase)

Identity

Alias (NCBI)C19orf43
TERCIR
fSAP18
HGNC (Hugo) TRIR
HGNC Alias symbMGC2803
fSAP18
TERCIR
HGNC Alias namefunctional spliceosome-associated protein 18
HGNC Previous nameC19orf43
HGNC Previous namechromosome 19 open reading frame 43
LocusID (NCBI) 79002
Atlas_Id 79828
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 12730640 and ends at 12734684 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TRIR   28424
Cards
Entrez_Gene (NCBI)TRIR    telomerase RNA component interacting RNase
AliasesC19orf43; TERCIR; fSAP18
GeneCards (Weizmann)TRIR
Ensembl hg19 (Hinxton)ENSG00000123144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123144 [Gene_View]  ENSG00000123144 [Sequence]  chr19:12730640-12734684 [Contig_View]  TRIR [Vega]
ICGC DataPortalENSG00000123144
TCGA cBioPortalTRIR
AceView (NCBI)TRIR
Genatlas (Paris)TRIR
SOURCE (Princeton)TRIR
Genetics Home Reference (NIH)TRIR
Genomic and cartography
GoldenPath hg38 (UCSC)TRIR  -     chr19:12730640-12734684 -  19p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIR  -     19p13.13   [Description]    (hg19-Feb_2009)
GoldenPathTRIR - 19p13.13 [CytoView hg19]  TRIR - 19p13.13 [CytoView hg38]
ImmunoBaseENSG00000123144
Genome Data Viewer NCBITRIR [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF061732 AK027588 AK315754 AL559579 BC000216
RefSeq transcript (Entrez)NM_001329738 NM_001329739 NM_024038
Consensus coding sequences : CCDS (NCBI)TRIR
Gene ExpressionTRIR [ NCBI-GEO ]   TRIR [ EBI - ARRAY_EXPRESS ]   TRIR [ SEEK ]   TRIR [ MEM ]
Gene Expression Viewer (FireBrowse)TRIR [ Firebrowse - Broad ]
GenevisibleExpression of TRIR in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79002
GTEX Portal (Tissue expression)TRIR
Human Protein AtlasENSG00000123144-TRIR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ61
PhosPhoSitePlusQ9BQ61
Domains : Interpro (EBI)TRIR   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRIR
SuperfamilyQ9BQ61
AlphaFold pdb e-kbQ9BQ61   
Human Protein Atlas [tissue]ENSG00000123144-TRIR [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ61
IntAct (EBI)Q9BQ61
BioGRIDTRIR
STRING (EMBL)TRIR
ZODIACTRIR
Ontologies - Pathways
QuickGOQ9BQ61
Ontology : AmiGORNA binding  protein binding  3'-5' exonuclease activity  3'-5' exonuclease activity  5'-3' exonuclease activity  5'-3' exonuclease activity  rRNA catabolic process  RNA phosphodiester bond hydrolysis, exonucleolytic  RNA phosphodiester bond hydrolysis, exonucleolytic  
Ontology : EGO-EBIRNA binding  protein binding  3'-5' exonuclease activity  3'-5' exonuclease activity  5'-3' exonuclease activity  5'-3' exonuclease activity  rRNA catabolic process  RNA phosphodiester bond hydrolysis, exonucleolytic  RNA phosphodiester bond hydrolysis, exonucleolytic  
NDEx NetworkTRIR
Atlas of Cancer Signalling NetworkTRIR
Wikipedia pathwaysTRIR
Orthology - Evolution
OrthoDB79002
GeneTree (enSembl)ENSG00000123144
Phylogenetic Trees/Animal Genes : TreeFamTRIR
Homologs : HomoloGeneTRIR
Homology/Alignments : Family Browser (UCSC)TRIR
Gene fusions - Rearrangements
Fusion : QuiverTRIR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIR
dbVarTRIR
ClinVarTRIR
MonarchTRIR
1000_GenomesTRIR 
Exome Variant ServerTRIR
GNOMAD BrowserENSG00000123144
Varsome BrowserTRIR
ACMGTRIR variants
VarityQ9BQ61
Genomic Variants (DGV)TRIR [DGVbeta]
DECIPHERTRIR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIR 
Mutations
ICGC Data PortalTRIR 
TCGA Data PortalTRIR 
Broad Tumor PortalTRIR
OASIS PortalTRIR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIR  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIR
Mutations and Diseases : HGMDTRIR
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIR
DgiDB (Drug Gene Interaction Database)TRIR
DoCM (Curated mutations)TRIR
CIViC (Clinical Interpretations of Variants in Cancer)TRIR
Cancer3DTRIR
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRIR
MedgenTRIR
Genetic Testing Registry TRIR
NextProtQ9BQ61 [Medical]
GENETestsTRIR
Target ValidationTRIR
Huge Navigator TRIR [HugePedia]
ClinGenTRIR
Clinical trials, drugs, therapy
MyCancerGenomeTRIR
Protein Interactions : CTDTRIR
Pharm GKB GenePA144596476
PharosQ9BQ61
Clinical trialTRIR
Miscellaneous
canSAR (ICR)TRIR
HarmonizomeTRIR
DataMed IndexTRIR
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:01 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.