Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRMO (tRNA methyltransferase O)

Identity

Alias_namesC9orf156
chromosome 9 open reading frame 156
Alias_symbol (synonym)HSPC219
Other aliasNAP1
HGNC (Hugo) TRMO
LocusID (NCBI) 51531
Atlas_Id 78027
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 100666771 and ends at 100684852 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GNA14 (9q21.2) / TRMO (9q22.33)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRMO   30967
Cards
Entrez_Gene (NCBI)TRMO  51531  tRNA methyltransferase O
AliasesC9orf156; HSPC219; NAP1
GeneCards (Weizmann)TRMO
Ensembl hg19 (Hinxton)ENSG00000136932 [Gene_View]  chr9:100666771-100684852 [Contig_View]  TRMO [Vega]
Ensembl hg38 (Hinxton)ENSG00000136932 [Gene_View]  chr9:100666771-100684852 [Contig_View]  TRMO [Vega]
ICGC DataPortalENSG00000136932
TCGA cBioPortalTRMO
AceView (NCBI)TRMO
Genatlas (Paris)TRMO
WikiGenes51531
SOURCE (Princeton)TRMO
Genetics Home Reference (NIH)TRMO
Genomic and cartography
GoldenPath hg19 (UCSC)TRMO  -     chr9:100666771-100684852 -  9q22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRMO  -     9q22.33   [Description]    (hg38-Dec_2013)
EnsemblTRMO - 9q22.33 [CytoView hg19]  TRMO - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBITRMO [Mapview hg19]  TRMO [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_016481
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)TRMO
Cluster EST : UnigeneHs.9196 [ NCBI ]
CGAP (NCI)Hs.9196
Alternative Splicing GalleryENSG00000136932
Gene ExpressionTRMO [ NCBI-GEO ]   TRMO [ EBI - ARRAY_EXPRESS ]   TRMO [ SEEK ]   TRMO [ MEM ]
Gene Expression Viewer (FireBrowse)TRMO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)51531
GTEX Portal (Tissue expression)TRMO
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRMO
DMDM Disease mutations51531
Blocks (Seattle)TRMO
Human Protein AtlasENSG00000136932
HPRD12945
IPIIPI00305858   IPI00514281   IPI01015281   IPI00647809   IPI00514120   
Protein Interaction databases
FunCoupENSG00000136932
BioGRIDTRMO
STRING (EMBL)TRMO
ZODIACTRMO
Ontologies - Pathways
Huge Navigator TRMO [HugePedia]
snp3D : Map Gene to Disease51531
BioCentury BCIQTRMO
ClinGenTRMO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51531
Chemical/Pharm GKB GenePA134875112
Clinical trialTRMO
Miscellaneous
canSAR (ICR)TRMO (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMO
EVEXTRMO
GoPubMedTRMO
iHOPTRMO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:49:50 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.