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TRMO (tRNA methyltransferase O)

Identity

Alias (NCBI)C9orf156
HSPC219
NAP1
HGNC (Hugo) TRMO
HGNC Alias symbHSPC219
HGNC Previous nameC9orf156
HGNC Previous namechromosome 9 open reading frame 156
LocusID (NCBI) 51531
Atlas_Id 78027
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 97904489 and ends at 97922500 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GNA14 (9q21.2) / TRMO (9q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRMO   30967
Cards
Entrez_Gene (NCBI)TRMO    tRNA methyltransferase O
AliasesC9orf156; HSPC219; NAP1
GeneCards (Weizmann)TRMO
Ensembl hg19 (Hinxton)ENSG00000136932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136932 [Gene_View]  ENSG00000136932 [Sequence]  chr9:97904489-97922500 [Contig_View]  TRMO [Vega]
ICGC DataPortalENSG00000136932
TCGA cBioPortalTRMO
AceView (NCBI)TRMO
Genatlas (Paris)TRMO
SOURCE (Princeton)TRMO
Genetics Home Reference (NIH)TRMO
Genomic and cartography
GoldenPath hg38 (UCSC)TRMO  -     chr9:97904489-97922500 -  9q22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMO  -     9q22.33   [Description]    (hg19-Feb_2009)
GoldenPathTRMO - 9q22.33 [CytoView hg19]  TRMO - 9q22.33 [CytoView hg38]
ImmunoBaseENSG00000136932
Genome Data Viewer NCBITRMO [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF151053 AK000213 AK023069 AK302701 AK309270
RefSeq transcript (Entrez)NM_001330725 NM_001371657 NM_001371658 NM_001371659 NM_001371660 NM_001371661 NM_016481
Consensus coding sequences : CCDS (NCBI)TRMO
Gene ExpressionTRMO [ NCBI-GEO ]   TRMO [ EBI - ARRAY_EXPRESS ]   TRMO [ SEEK ]   TRMO [ MEM ]
Gene Expression Viewer (FireBrowse)TRMO [ Firebrowse - Broad ]
GenevisibleExpression of TRMO in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51531
GTEX Portal (Tissue expression)TRMO
Human Protein AtlasENSG00000136932-TRMO [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BU70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BU70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BU70
PhosPhoSitePlusQ9BU70
Domaine pattern : Prosite (Expaxy)TSAA_1 (PS01318)    TSAA_2 (PS51668)   
Domains : Interpro (EBI)TrmO-like_N    UPF0066_cons_site    YaeB-like    YaeB-like_sf    YaeB_N_sf   
Domain families : Pfam (Sanger)TrmO (PF01980)   
Domain families : Pfam (NCBI)pfam01980   
Conserved Domain (NCBI)TRMO
SuperfamilyQ9BU70
AlphaFold pdb e-kbQ9BU70   
Human Protein Atlas [tissue]ENSG00000136932-TRMO [tissue]
HPRD12945
Protein Interaction databases
DIP (DOE-UCLA)Q9BU70
IntAct (EBI)Q9BU70
BioGRIDTRMO
STRING (EMBL)TRMO
ZODIACTRMO
Ontologies - Pathways
QuickGOQ9BU70
Ontology : AmiGOprotein binding  tRNA (adenine-N6-)-methyltransferase activity  tRNA (adenine-N6-)-methyltransferase activity  tRNA methylation  
Ontology : EGO-EBIprotein binding  tRNA (adenine-N6-)-methyltransferase activity  tRNA (adenine-N6-)-methyltransferase activity  tRNA methylation  
NDEx NetworkTRMO
Atlas of Cancer Signalling NetworkTRMO
Wikipedia pathwaysTRMO
Orthology - Evolution
OrthoDB51531
GeneTree (enSembl)ENSG00000136932
Phylogenetic Trees/Animal Genes : TreeFamTRMO
Homologs : HomoloGeneTRMO
Homology/Alignments : Family Browser (UCSC)TRMO
Gene fusions - Rearrangements
Fusion : QuiverTRMO
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMO
dbVarTRMO
ClinVarTRMO
MonarchTRMO
1000_GenomesTRMO 
Exome Variant ServerTRMO
GNOMAD BrowserENSG00000136932
Varsome BrowserTRMO
ACMGTRMO variants
VarityQ9BU70
Genomic Variants (DGV)TRMO [DGVbeta]
DECIPHERTRMO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMO 
Mutations
ICGC Data PortalTRMO 
TCGA Data PortalTRMO 
Broad Tumor PortalTRMO
OASIS PortalTRMO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMO  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRMO
Mutations and Diseases : HGMDTRMO
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRMO
DgiDB (Drug Gene Interaction Database)TRMO
DoCM (Curated mutations)TRMO
CIViC (Clinical Interpretations of Variants in Cancer)TRMO
Cancer3DTRMO
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRMO
MedgenTRMO
Genetic Testing Registry TRMO
NextProtQ9BU70 [Medical]
GENETestsTRMO
Target ValidationTRMO
Huge Navigator TRMO [HugePedia]
ClinGenTRMO
Clinical trials, drugs, therapy
MyCancerGenomeTRMO
Protein Interactions : CTDTRMO
Pharm GKB GenePA134875112
PharosQ9BU70
Clinical trialTRMO
Miscellaneous
canSAR (ICR)TRMO
HarmonizomeTRMO
DataMed IndexTRMO
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRMO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:02 CEST 2021

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