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TRMO (tRNA methyltransferase O)

Identity

Alias_namesC9orf156
chromosome 9 open reading frame 156
Alias_symbol (synonym)HSPC219
Other aliasNAP1
HGNC (Hugo) TRMO
LocusID (NCBI) 51531
Atlas_Id 78027
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 97904489 and ends at 97922570 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GNA14 (9q21.2) / TRMO (9q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRMO   30967
Cards
Entrez_Gene (NCBI)TRMO  51531  tRNA methyltransferase O
AliasesC9orf156; HSPC219; NAP1
GeneCards (Weizmann)TRMO
Ensembl hg19 (Hinxton)ENSG00000136932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136932 [Gene_View]  chr9:97904489-97922570 [Contig_View]  TRMO [Vega]
ICGC DataPortalENSG00000136932
TCGA cBioPortalTRMO
AceView (NCBI)TRMO
Genatlas (Paris)TRMO
WikiGenes51531
SOURCE (Princeton)TRMO
Genetics Home Reference (NIH)TRMO
Genomic and cartography
GoldenPath hg38 (UCSC)TRMO  -     chr9:97904489-97922570 -  9q22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMO  -     9q22.33   [Description]    (hg19-Feb_2009)
EnsemblTRMO - 9q22.33 [CytoView hg19]  TRMO - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBITRMO [Mapview hg19]  TRMO [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151053 AK000213 AK023069 AK302701 AK309270
RefSeq transcript (Entrez)NM_001330725 NM_016481
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMO
Cluster EST : UnigeneHs.9196 [ NCBI ]
CGAP (NCI)Hs.9196
Alternative Splicing GalleryENSG00000136932
Gene ExpressionTRMO [ NCBI-GEO ]   TRMO [ EBI - ARRAY_EXPRESS ]   TRMO [ SEEK ]   TRMO [ MEM ]
Gene Expression Viewer (FireBrowse)TRMO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51531
GTEX Portal (Tissue expression)TRMO
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BU70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BU70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BU70
Splice isoforms : SwissVarQ9BU70
PhosPhoSitePlusQ9BU70
Domaine pattern : Prosite (Expaxy)TSAA_1 (PS01318)    TSAA_2 (PS51668)   
Domains : Interpro (EBI)TsaA-like    UPF0066_cons_site   
Domain families : Pfam (Sanger)UPF0066 (PF01980)   
Domain families : Pfam (NCBI)pfam01980   
Conserved Domain (NCBI)TRMO
DMDM Disease mutations51531
Blocks (Seattle)TRMO
SuperfamilyQ9BU70
Human Protein AtlasENSG00000136932
Peptide AtlasQ9BU70
HPRD12945
IPIIPI00305858   IPI00514281   IPI01015281   IPI00647809   IPI00514120   
Protein Interaction databases
DIP (DOE-UCLA)Q9BU70
IntAct (EBI)Q9BU70
FunCoupENSG00000136932
BioGRIDTRMO
STRING (EMBL)TRMO
ZODIACTRMO
Ontologies - Pathways
QuickGOQ9BU70
Ontology : AmiGOtRNA (adenine-N6-)-methyltransferase activity  tRNA methylation  
Ontology : EGO-EBItRNA (adenine-N6-)-methyltransferase activity  tRNA methylation  
NDEx NetworkTRMO
Atlas of Cancer Signalling NetworkTRMO
Wikipedia pathwaysTRMO
Orthology - Evolution
OrthoDB51531
GeneTree (enSembl)ENSG00000136932
Phylogenetic Trees/Animal Genes : TreeFamTRMO
HOVERGENQ9BU70
HOGENOMQ9BU70
Homologs : HomoloGeneTRMO
Homology/Alignments : Family Browser (UCSC)TRMO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMO
dbVarTRMO
ClinVarTRMO
1000_GenomesTRMO 
Exome Variant ServerTRMO
ExAC (Exome Aggregation Consortium)TRMO (select the gene name)
Genetic variants : HAPMAP51531
Genomic Variants (DGV)TRMO [DGVbeta]
DECIPHERTRMO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMO 
Mutations
ICGC Data PortalTRMO 
TCGA Data PortalTRMO 
Broad Tumor PortalTRMO
OASIS PortalTRMO [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRMO
BioMutasearch TRMO
DgiDB (Drug Gene Interaction Database)TRMO
DoCM (Curated mutations)TRMO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMO (select a term)
intoGenTRMO
Cancer3DTRMO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRMO
Genetic Testing Registry TRMO
NextProtQ9BU70 [Medical]
TSGene51531
GENETestsTRMO
Target ValidationTRMO
Huge Navigator TRMO [HugePedia]
snp3D : Map Gene to Disease51531
BioCentury BCIQTRMO
ClinGenTRMO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51531
Chemical/Pharm GKB GenePA134875112
Clinical trialTRMO
Miscellaneous
canSAR (ICR)TRMO (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMO
EVEXTRMO
GoPubMedTRMO
iHOPTRMO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:14 CEST 2017

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